Tobias Depke
| Snapshot Date: 2024-06-09 14:00 -0400 (Sun, 09 Jun 2024) |
| git_url: https://git.bioconductor.org/packages/CluMSID |
| git_branch: RELEASE_3_19 |
| git_last_commit: 0865238 |
| git_last_commit_date: 2024-04-30 11:11:45 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-06-11 14:43 -0400 (Tue, 11 Jun 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4757 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4491 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4522 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4468 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 370/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CluMSID 1.20.0 (landing page) Tobias Depke
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the CluMSID package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CluMSID.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CluMSID |
| Version: 1.20.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID |
| StartedAt: 2024-06-09 19:34:34 -0400 (Sun, 09 Jun 2024) |
| EndedAt: 2024-06-09 19:39:52 -0400 (Sun, 09 Jun 2024) |
| EllapsedTime: 317.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CluMSID
###
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* checking for file ‘CluMSID/DESCRIPTION’ ... OK
* preparing ‘CluMSID’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CluMSID_DI-MSMS.Rmd’ using rmarkdown
2024-06-09 19:35:53.968 R[1012:32251971] XType: Using static font registry.
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CluMSID DI-MS/MS Tutorial", and the latter is "Clustering Spectra from High Resolution DI-MS/MS Data Using CluMSID". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CluMSID_DI-MSMS.Rmd’
--- re-building ‘CluMSID_GC-EI-MS.Rmd’ using rmarkdown
Quitting from lines 127-130 [runCAMERA] (CluMSID_GC-EI-MS.Rmd)
Error: processing vignette 'CluMSID_GC-EI-MS.Rmd' failed with diagnostics:
wrong args for environment subassignment
--- failed re-building ‘CluMSID_GC-EI-MS.Rmd’
--- re-building ‘CluMSID_MTBLS.Rmd’ using rmarkdown
Quitting from lines 237-238 [dendro] (CluMSID_MTBLS.Rmd)
Error: processing vignette 'CluMSID_MTBLS.Rmd' failed with diagnostics:
QuartzBitmap_Output - unable to open file '/tmp/Rtmp1Tm7kc/file3f464dbb30f'
--- failed re-building ‘CluMSID_MTBLS.Rmd’
--- re-building ‘CluMSID_lowres-LC-MSMS.Rmd’ using rmarkdown
Quitting from lines 136-137 [MDS] (CluMSID_lowres-LC-MSMS.Rmd)
Error: processing vignette 'CluMSID_lowres-LC-MSMS.Rmd' failed with diagnostics:
QuartzBitmap_Output - unable to open file '/tmp/Rtmp1Tm7kc/file3f411fd88f'
--- failed re-building ‘CluMSID_lowres-LC-MSMS.Rmd’
--- re-building ‘CluMSID_tutorial.Rmd’ using rmarkdown
Quitting from lines 504-505 [MDSplotplot_1] (CluMSID_tutorial.Rmd)
Error: processing vignette 'CluMSID_tutorial.Rmd' failed with diagnostics:
QuartzBitmap_Output - unable to open file '/tmp/Rtmp1Tm7kc/file3f417a8b251'
--- failed re-building ‘CluMSID_tutorial.Rmd’
SUMMARY: processing the following files failed:
‘CluMSID_GC-EI-MS.Rmd’ ‘CluMSID_MTBLS.Rmd’
‘CluMSID_lowres-LC-MSMS.Rmd’ ‘CluMSID_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted