Aedin Culhane
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/made4 |
| git_branch: RELEASE_3_18 |
| git_last_commit: 4fa6232 |
| git_last_commit_date: 2023-10-24 09:34:42 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:40:52 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1130/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| made4 1.76.0 (landing page) Aedin Culhane
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the made4 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/made4.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: made4 |
| Version: 1.76.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings made4_1.76.0.tar.gz |
| StartedAt: 2023-11-02 11:47:05 -0000 (Thu, 02 Nov 2023) |
| EndedAt: 2023-11-02 11:50:29 -0000 (Thu, 02 Nov 2023) |
| EllapsedTime: 204.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: made4.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:made4.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings made4_1.76.0.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/made4.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (GCC) 10.3.1
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘made4/DESCRIPTION’ ... OK
* this is package ‘made4’ version ‘1.76.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘made4’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) NCI60.Rd:19: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:22: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:25: Escaped LaTeX specials: \$
checkRd: (-1) NCI60.Rd:30: Escaped LaTeX specials: \$
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checkRd: (-1) NCI60.Rd:64: Escaped LaTeX specials: \$ \$
prepare_Rd: asDataFrame.Rd:30: Dropping empty section \examples
checkRd: (-1) between.graph.Rd:17: Escaped LaTeX specials: \$ \$
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checkRd: (-1) jmol3D.Rd:14: Escaped LaTeX specials: \$ \$
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* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.18-bioc/meat/made4.Rcheck/00check.log’
for details.
made4.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL made4 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’ * installing *source* package ‘made4’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (made4)
made4.Rcheck/made4-Ex.timings
| name | user | system | elapsed | |
| NCI60 | 0.003 | 0.004 | 0.007 | |
| bet.coinertia | 0.011 | 0.000 | 0.011 | |
| between.graph | 0.318 | 0.032 | 0.351 | |
| bga | 0.389 | 0.020 | 0.410 | |
| bga.jackknife | 1.874 | 0.044 | 1.921 | |
| bga.suppl | 0.480 | 0.008 | 0.489 | |
| cia | 0.203 | 0.004 | 0.207 | |
| commonMap | 0.031 | 0.000 | 0.031 | |
| comparelists | 0.001 | 0.000 | 0.001 | |
| do3d | 0.436 | 0.008 | 0.445 | |
| genes1d | 0.116 | 0.004 | 0.120 | |
| getcol | 0.024 | 0.000 | 0.024 | |
| graph1D | 0.081 | 0.004 | 0.085 | |
| heatplot | 3.057 | 0.024 | 3.087 | |
| html3D | 0.270 | 0.000 | 0.271 | |
| isDataFrame | 0.026 | 0.000 | 0.027 | |
| khan | 0.007 | 0.000 | 0.007 | |
| ord | 0.276 | 0.000 | 0.276 | |
| overview | 0.601 | 0.004 | 0.605 | |
| plotarrays | 0.315 | 0.000 | 0.316 | |
| plotgenes | 0.126 | 0.008 | 0.134 | |
| prettyDend | 0.729 | 0.004 | 0.733 | |
| randomiser | 0.003 | 0.000 | 0.003 | |
| s.var | 0.28 | 0.00 | 0.28 | |
| sumstats | 0.283 | 0.000 | 0.284 | |
| suppl | 0.527 | 0.000 | 0.529 | |
| topgenes | 0.098 | 0.000 | 0.098 | |