Greg Finak
| Snapshot Date: 2023-11-01 14:05:06 -0400 (Wed, 01 Nov 2023) |
| git_url: https://git.bioconductor.org/packages/flowWorkspace |
| git_branch: RELEASE_3_18 |
| git_last_commit: e9a6f2a |
| git_last_commit_date: 2023-10-24 09:46:49 -0400 (Tue, 24 Oct 2023) |
| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:40:42 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 745/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowWorkspace 4.14.0 (landing page) Greg Finak
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the flowWorkspace package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowWorkspace.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: flowWorkspace |
| Version: 4.14.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL flowWorkspace |
| StartedAt: 2023-11-01 20:16:43 -0000 (Wed, 01 Nov 2023) |
| EndedAt: 2023-11-01 20:20:28 -0000 (Wed, 01 Nov 2023) |
| EllapsedTime: 224.9 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL flowWorkspace
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘flowWorkspace’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_API.cpp -o R_API.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_API.cpp:9:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_API.cpp:9:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_GatingHierarchy.cpp -o R_GatingHierarchy.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_GatingHierarchy.cpp:18:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from R_GatingHierarchy.cpp:18:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
R_GatingHierarchy.cpp: In function ‘cytolib::gatePtr newGate(cpp11::list)’:
R_GatingHierarchy.cpp:822:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
822 | for (int i = 0; i < ranges_input.size(); i += 2) {
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c R_GatingSet.cpp -o R_GatingSet.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from R_GatingSet.cpp:10:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from R_GatingSet.cpp:10:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c cpp11.cpp -o cpp11.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from cpp11.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrameView.hpp:12,
from flowWorkspace_types.h:7,
from cpp11.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11.hpp:10,
from /home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/declarations.hpp:13,
from flowWorkspace_types.h:5,
from cpp11.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/external_pointer.hpp: In instantiation of ‘void cpp11::default_deleter(T*) [with T = cytolib::CytoFrameView]’:
cpp11.cpp:9:56: required from here
/home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/external_pointer.hpp:17:3: warning: deleting object of polymorphic class type ‘cytolib::CytoFrameView’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
17 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c cytoframeAPI.cpp -o cytoframeAPI.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytoframeAPI.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytoframeAPI.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from cytoframeAPI.cpp:8:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h: In function ‘cpp11::writable::doubles_matrix<> arma_to_rmatrix(const mat&)’:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:33:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
33 | for (auto j = 0; j < m; j++) {
| ~~^~~
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:34:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
34 | for (auto i = 0; i < n; i++) {
| ~~^~~
cytoframeAPI.cpp: In function ‘cpp11::writable::doubles_matrix<> cf_getData(cpp11::external_pointer<cytolib::CytoFrameView>)’:
cytoframeAPI.cpp:223:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
223 | for(int i = 0; i < ncol; i++)
| ~~^~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11.hpp:10,
from cytoframeAPI.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/external_pointer.hpp: In instantiation of ‘void cpp11::default_deleter(T*) [with T = cytolib::CytoFrameView]’:
cytoframeAPI.cpp:12:76: required from here
/home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/external_pointer.hpp:17:3: warning: deleting object of polymorphic class type ‘cytolib::CytoFrameView’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
17 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c cytosetAPI.cpp -o cytosetAPI.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytosetAPI.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/H5CytoFrame.hpp:12,
from cytosetAPI.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from cytosetAPI.cpp:2:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h: In function ‘cpp11::writable::doubles_matrix<> arma_to_rmatrix(const mat&)’:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:33:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
33 | for (auto j = 0; j < m; j++) {
| ~~^~~
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:34:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
34 | for (auto i = 0; i < n; i++) {
| ~~^~~
cytosetAPI.cpp: In function ‘cpp11::external_pointer<cytolib::GatingSet> fcs_to_cytoset(cpp11::strings, cpp11::list, std::string, std::string)’:
cytosetAPI.cpp:71:26: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare]
71 | for (size_t i = 0; i < n; i++)
| ~~^~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11.hpp:10,
from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:10,
from cytosetAPI.cpp:2:
/home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/external_pointer.hpp: In instantiation of ‘void cpp11::default_deleter(T*) [with T = cytolib::CytoFrameView]’:
cytosetAPI.cpp:32:107: required from here
/home/biocbuild/R/R-4.3.1/site-library/cpp11/include/cpp11/external_pointer.hpp:17:3: warning: deleting object of polymorphic class type ‘cytolib::CytoFrameView’ which has non-virtual destructor might cause undefined behavior [-Wdelete-non-virtual-dtor]
17 | delete obj;
| ^~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c getDescendants.cpp -o getDescendants.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from getDescendants.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from getDescendants.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c getPopStats.cpp -o getPopStats.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from getPopStats.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from getPopStats.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
getPopStats.cpp: In function ‘cpp11::list getPopCounts_cpp(cpp11::external_pointer<cytolib::GatingSet>, bool, cytolib::StringVec, bool, bool)’:
getPopStats.cpp:37:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
37 | for(int i = 0; i < nSample; i++)
| ~~^~~~~~~~~
getPopStats.cpp:48:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
48 | for(int j = 0; j < nPop; j++){
| ~~^~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c getSingleCellExpression.cpp -o getSingleCellExpression.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from getSingleCellExpression.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from getSingleCellExpression.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c h5_error_r_handler.cpp -o h5_error_r_handler.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:12,
from h5_error_r_handler.cpp:8:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from ../inst/include/flowWorkspace/pairVectorCpp11Convert.h:12,
from h5_error_r_handler.cpp:8:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
In file included from h5_error_r_handler.cpp:8:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h: In function ‘cpp11::writable::doubles_matrix<> arma_to_rmatrix(const mat&)’:
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:33:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
33 | for (auto j = 0; j < m; j++) {
| ~~^~~
../inst/include/flowWorkspace/pairVectorCpp11Convert.h:34:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
34 | for (auto i = 0; i < n; i++) {
| ~~^~~
g++ -std=gnu++11 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -Wno-pedantic -I'/home/biocbuild/R/R-4.3.1/site-library/cpp11/include' -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I'/home/biocbuild/R/R-4.3.1/site-library/RProtoBufLib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/cytolib/include' -I'/home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/include' -I/usr/local/include -fPIC -g -O2 -Wall -c setCounts.cpp -o setCounts.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_facade.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range_core.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/iterator_range.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/range/as_literal.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string/trim.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/algorithm/string.hpp:19,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/transformation.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:15,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from setCounts.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/CytoFrame.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/MemCytoFrame.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/gate.hpp:12,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/POPINDICES.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/nodeProperties.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/populationTree.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingHierarchy.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/GatingSet.hpp:14,
from setCounts.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp: In constructor ‘cytolib::compensation::compensation(const string&)’:
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:58:20: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
58 | if(valVec.size() != 1+n+n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:62:21: warning: comparison of integer expressions of different signedness: ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
62 | if(valVec.size() == 1+n+2*n*n){
| ~~~~~~~~~~~~~~^~~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/cytolib/include/cytolib/compensation.hpp:68:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char>, std::allocator<std::__cxx11::basic_string<char> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
68 | for(int i = 1+n, j = 1+n; i < valVec_fixed.size(); i++, j+=2)
| ~~^~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o flowWorkspace.so R_API.o R_GatingHierarchy.o R_GatingSet.o cpp11.o cytoframeAPI.o cytosetAPI.o getDescendants.o getPopStats.o getSingleCellExpression.o h5_error_r_handler.o setCounts.o /home/biocbuild/R/R-4.3.1/site-library/cytolib/lib/libcytolib.a /home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/lib/libhdf5_cpp.a /home/biocbuild/R/R-4.3.1/site-library/Rhdf5lib/lib/libhdf5.a -lcrypto -lcurl -lsz -laec -lz -ldl -lm -llapack -lblas -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-flowWorkspace/00new/flowWorkspace/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (flowWorkspace)