##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/bbs-3.18-bioc/R/site-library --timings fcScan_1.16.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/fcScan.Rcheck’
* using R version 4.3.3 (2024-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.16.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘fcScan_vignette.Rmd’ using ‘UTF8’... OK
 OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.18-bioc/R/site-library’
* installing *source* package ‘fcScan’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2315316 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09467411 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08523536 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08936572 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.103538 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2227306 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09028506 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08475924 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06201267 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.05866933 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08291411 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06479335 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07918763 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07673168 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08836079 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0662179 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07709289 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08554864 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06567502 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08957696 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08068705 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06123781 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09526944 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1082995 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07611251 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08746862 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0878613 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07029462 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08315754 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1051736 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09679866 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08982444 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1193957 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09064174 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1097844 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1011391 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1113961 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09348869 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1010673 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.149977 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1031919 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1140757 secs


RUNIT TEST PROTOCOL -- Mon Apr 15 22:49:56 2024 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 17.274   0.951  18.912