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### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD check --install=check:condiments.install-out.txt --library=/home/biocbuild/R/R-4.3.1/site-library --no-vignettes --timings condiments_1.10.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.18-bioc/meat/condiments.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (GCC) 10.3.1
    GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘condiments/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘condiments’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘condiments’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.condition_sling: no visible binding for global variable ‘.’
.condition_sling : <anonymous>: no visible binding for global variable
  ‘.’
.distinct_inputs: no visible binding for global variable ‘Samples’
.distinct_inputs: no visible binding for global variable ‘.’
.fateSelectionTest: no visible binding for global variable ‘pair’
.fateSelectionTest: no visible binding for global variable ‘statistic’
.fateSelectionTest: no visible binding for global variable ‘p.value’
.multiple_samples: no visible binding for global variable ‘p.value’
.progressionTest: no visible binding for global variable ‘lineage’
.progressionTest: no visible binding for global variable ‘statistic’
.progressionTest: no visible binding for global variable ‘p.value’
.topologyTest_multipleSamples: no visible binding for global variable
  ‘p.value’
fateSelectionTest_multipleSamples,SlingshotDataSet: no visible binding
  for global variable ‘condition’
progressionTest_multipleSamples,SlingshotDataSet: no visible binding
  for global variable ‘condition’
Undefined global functions or variables:
  . Samples condition lineage p.value pair statistic
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
topologyTest 5.474  0.071    5.59
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’/home/biocbuild/R/R-4.3.1/bin/BATCH: line 60: 845507 Killed                  ${R_HOME}/bin/R -f ${in} ${opts} ${R_BATCH_OPTIONS} > ${out} 2>&1

 ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
  note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .
  
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.18-bioc/meat/condiments.Rcheck/00check.log’
for details.

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###
### Running command:
###
###   /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL condiments
###
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* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘condiments’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (condiments)

R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(condiments)
> library(testthat)
> test_check("condiments")
note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 2 unique complexity parameters in default grid. Truncating the grid to 2 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 2 unique complexity parameters in default grid. Truncating the grid to 2 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .

note: only 1 unique complexity parameters in default grid. Truncating the grid to 1 .