| Back to Multiple platform build/check report for BioC 3.18: simplified long |
|
This page was generated on 2023-11-02 11:41:08 -0400 (Thu, 02 Nov 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4729 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4463 |
| lconway | macOS 12.6.5 Monterey | x86_64 | 4.3.1 Patched (2023-06-17 r84564) -- "Beagle Scouts" | 4478 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4464 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1665/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RBGL 1.78.0 (landing page) Bioconductor Package Maintainer
| nebbiolo2 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.6.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | see weekly results here | ||||||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the RBGL package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RBGL.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: RBGL |
| Version: 1.78.0 |
| Command: /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL RBGL |
| StartedAt: 2023-11-01 20:06:45 -0000 (Wed, 01 Nov 2023) |
| EndedAt: 2023-11-01 20:09:39 -0000 (Wed, 01 Nov 2023) |
| EllapsedTime: 174.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R-4.3.1/bin/R CMD INSTALL RBGL
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-4.3.1/site-library’
* installing *source* package ‘RBGL’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 10.3.1’
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c bbc.cpp -o bbc.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from bbc.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from bbc.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c cliques.cpp -o cliques.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from cliques.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from cliques.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c clusteringCoef.cpp -o clusteringCoef.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from clusteringCoef.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from clusteringCoef.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c dominatorTree.cpp -o dominatorTree.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from dominatorTree.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from dominatorTree.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from edmonds_optimum_branching.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from edmonds_optimum_branching.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from edmonds_optimum_branching.hpp:94,
from edmonds_optimum_branching.cpp:3:
edmonds_optimum_branching_impl.hpp: In function ‘void edmonds_optimum_branching(TEdgeListGraph&, TVertexIndexMap, TWeightMap, TInputIterator, TInputIterator, TOutputIterator)’:
edmonds_optimum_branching_impl.hpp:520:71: warning: typedef ‘EdgeIter’ locally defined but not used [-Wunused-local-typedefs]
520 | typedef typename graph_traits<TEdgeListGraph>::edge_iterator EdgeIter;
| ^~~~~~~~
edmonds_optimum_branching_impl.hpp:521:71: warning: typedef ‘weight_t’ locally defined but not used [-Wunused-local-typedefs]
521 | typedef typename property_traits<TWeightMap>::value_type weight_t;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c hcs.cpp -o hcs.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from hcs.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from hcs.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c incrConnComp.cpp -o incrConnComp.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from incrConnComp.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from incrConnComp.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from incrConnComp.cpp:2:
incrConnComp.cpp: In function ‘SEXPREC* BGL_incr_comp_internal(SEXP, SEXP, SEXP, E_IC_METHOD)’:
incrConnComp.cpp:74:32: warning: unused variable ‘child_index’ [-Wunused-variable]
74 | BOOST_FOREACH(VertexIndex child_index, components[current_index]) {
| ^~~~~~~~~~~
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/foreach.hpp:1114:14: note: in definition of macro ‘BOOST_FOREACH’
1114 | for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true)
| ^~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c interfaces.cpp -o interfaces.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from interfaces.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from interfaces.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_tsort_D(SEXP, SEXP, SEXP)’:
interfaces.cpp:81:17: warning: catching polymorphic type ‘struct boost::not_a_dag’ by value [-Wcatch-value=]
81 | catch ( not_a_dag )
| ^~~~~~~~~
interfaces.cpp:57:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
57 | typedef graph_traits < Graph_dd >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:61:62: warning: typedef ‘Color’ locally defined but not used [-Wunused-local-typedefs]
61 | typedef property_map<Graph_dd, vertex_color_t>::type Color;
| ^~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_bfs_D(SEXP, SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:98:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
98 | typedef graph_traits < Graph_dd >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:99:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
99 | typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
| ^~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_dfs_D(SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:142:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
142 | typedef graph_traits < Graph_dd >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:143:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
143 | typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
| ^~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_connected_components_U(SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:198:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
198 | typedef graph_traits < Graph_ud >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:199:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
199 | typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
| ^~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_strong_components_D(SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:225:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
225 | typedef graph_traits < Graph_dd >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:226:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
226 | typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
| ^~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_biconnected_components_U(SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:252:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
252 | typedef graph_traits < Graph_ud >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:253:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
253 | typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
| ^~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_articulation_points_U(SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:295:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
295 | typedef graph_traits < Graph_ud >::edge_descriptor Edge;
| ^~~~
interfaces.cpp: In function ‘SEXPREC* BGL_edge_connectivity_U(SEXP, SEXP, SEXP, SEXP)’:
interfaces.cpp:320:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
320 | typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
| ^~~~~~
interfaces.cpp: In function ‘SEXPREC* BGL_sequential_vertex_coloring(SEXP, SEXP, SEXP)’:
interfaces.cpp:360:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
360 | typedef graph_traits < Graph_ud >::edge_descriptor Edge;
| ^~~~
interfaces.cpp:361:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
361 | typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
| ^~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c minST.cpp -o minST.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from minST.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
minST.cpp: In function ‘SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)’:
minST.cpp:14:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
14 | typedef graph_traits < Graph_dd >::vertex_descriptor Vertex;
| ^~~~~~
minST.cpp: In function ‘SEXPREC* BGL_KMST_U(SEXP, SEXP, SEXP, SEXP)’:
minST.cpp:48:62: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
48 | typedef graph_traits < Graph_ud >::vertex_descriptor Vertex;
| ^~~~~~
minST.cpp: In function ‘SEXPREC* BGL_PRIM_U(SEXP, SEXP, SEXP, SEXP)’:
minST.cpp:81:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
81 | typedef graph_traits < Graph_ud >::edge_descriptor Edge;
| ^~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘SEXPREC* BGL_KMST_D(SEXP, SEXP, SEXP, SEXP)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& ei +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from minST.cpp:2:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/kruskal_min_spanning_tree.hpp:78:55: note: ‘*((void*)& ei +48)’ was declared here
78 | typename graph_traits< Graph >::edge_iterator ei, eiend;
| ^~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:32,
from RBGL.hpp:38,
from minST.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/edge.hpp:27:71: warning: ‘*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
27 | inline edge_base(Vertex s, Vertex d) : m_source(s), m_target(d) {}
| ^
In file included from minST.cpp:2:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/kruskal_min_spanning_tree.hpp:78:55: note: ‘*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ was declared here
78 | typename graph_traits< Graph >::edge_iterator ei, eiend;
| ^~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c mincut.cpp -o mincut.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from mincut.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘SEXPREC* BGL_max_flow_internal(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, E_MF_METHOD)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& ei +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
mincut.cpp:99:19: note: ‘*((void*)& ei +48)’ was declared here
99 | edge_iterator ei, e_end;
| ^~
mincut.cpp:103:33: warning: ‘*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
103 | INTEGER(eList)[i++] = source(*ei, flow_g);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from mincut.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:148:48: warning: ‘*((void*)(& ei)+32).__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > > > > >::_M_current’ may be used uninitialized in this function [-Wmaybe-uninitialized]
148 | &(*this->base()).get_property());
| ^
mincut.cpp:99:19: note: ‘*((void*)(& ei)+32).__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_capacity_t, double, boost::property<boost::edge_residual_capacity_t, double, boost::property<boost::edge_reverse_t, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int> > > > > > > >::_M_current’ was declared here
99 | edge_iterator ei, e_end;
| ^~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c ordering.cpp -o ordering.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from ordering.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/king_ordering.hpp:18,
from ordering.cpp:9:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from ordering.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
ordering.cpp: In function ‘SEXPREC* BGL_min_degree_ordering(SEXP, SEXP, SEXP, SEXP)’:
ordering.cpp:133:53: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
133 | typedef graph_traits<Graph_dd>::vertex_descriptor Vertex;
| ^~~~~~
ordering.cpp: In function ‘SEXPREC* BGL_king_ordering(SEXP, SEXP, SEXP, SEXP)’:
ordering.cpp:182:48: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
182 | property_map<Graph_dd, vertex_index_t>::type id = get(vertex_index, g);
| ^~
ordering.cpp:176:53: warning: typedef ‘Vertex’ locally defined but not used [-Wunused-local-typedefs]
176 | typedef graph_traits<Graph_dd>::vertex_descriptor Vertex;
| ^~~~~~
ordering.cpp: In function ‘SEXPREC* BGL_sloan_ordering(SEXP, SEXP, SEXP, SEXP, SEXP)’:
ordering.cpp:232:47: warning: typedef ‘Pair’ locally defined but not used [-Wunused-local-typedefs]
232 | typedef std::pair<std::size_t, std::size_t> Pair;
| ^~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c planar.cpp -o planar.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from planar.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from planar.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
planar.cpp: In function ‘SEXPREC* planarFaceTraversal(SEXP, SEXP, SEXP)’:
planar.cpp:161:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::vector<long unsigned int>, std::allocator<std::vector<long unsigned int> > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
161 | for ( int i = 0; i < v_vis.f_vis.size(); i++ )
| ~~^~~~~~~~~~~~~~~~~~~~
planar.cpp:165:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
165 | for ( int j = 0; j < v_vis.f_vis[i].size(); j++ )
| ~~^~~~~~~~~~~~~~~~~~~~~~~
planar.cpp: In function ‘SEXPREC* planarCanonicalOrdering(SEXP, SEXP, SEXP)’:
planar.cpp:256:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<long unsigned int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
256 | for ( int i = 0; i < ordering.size(); i++ )
| ~~^~~~~~~~~~~~~~~~~
planar.cpp:225:34: warning: variable ‘oi_end’ set but not used [-Wunused-but-set-variable]
225 | Vertex_Vec_t::iterator oi, oi_end = ordering.end();
| ^~~~~~
planar.cpp: In function ‘SEXPREC* isStraightLineDrawing(SEXP, SEXP, SEXP, SEXP)’:
planar.cpp:369:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘boost::detail::adj_list_gen<boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >, boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int>, boost::no_property, boost::listS>::config::vertices_size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
369 | for ( int i = 0, j = 0; i < num_vertices(g); i++ )
| ~~^~~~~~~~~~~~~~~~~
planar.cpp: In function ‘SEXPREC* isKuratowskiSubgraph(SEXP, SEXP, SEXP)’:
planar.cpp:429:36: warning: variable ‘ki_end’ set but not used [-Wunused-but-set-variable]
429 | Edge_Vec_t::iterator ki, ki_end = kuratowski_edges.end();
| ^~~~~~
planar.cpp:461:6: warning: unused variable ‘i’ [-Wunused-variable]
461 | int i, j = 0;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/boyer_myrvold_planar_test.hpp:12,
from planar.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function ‘void boost::boyer_myrvold_impl<Graph, VertexIndexMap, StoreOldHandlesPolicy, StoreEmbeddingPolicy>::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator<std::vector<boost::detail::edge_desc_impl<boost::undirected_tag, long unsigned int> > >; EdgeIndexMap = boost::adj_list_edge_property_map<boost::undirected_tag, int, const int&, long unsigned int, const boost::property<boost::edge_index_t, int>, boost::edge_index_t>; Graph = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS, boost::property<boost::vertex_index_t, int>, boost::property<boost::edge_index_t, int> >; VertexIndexMap = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_index_t, int>, long unsigned int>; StoreOldHandlesPolicy = boost::graph::detail::store_old_handles; StoreEmbeddingPolicy = boost::graph::detail::no_embedding]’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1616:22: warning: ‘bicomp_root’ may be used uninitialized in this function [-Wmaybe-uninitialized]
1616 | while (child != parent)
| ~~~~~~^~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c registerSigHandlers.cpp -o registerSigHandlers.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from registerSigHandlers.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from registerSigHandlers.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c shortestPath.cpp -o shortestPath.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from shortestPath.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
shortestPath.cpp: In function ‘SEXPREC* BGL_dijkstra_shortest_paths_D(SEXP, SEXP, SEXP, SEXP, SEXP)’:
shortestPath.cpp:17:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
17 | typedef graph_traits < Graph_dd >::edge_descriptor Edge;
| ^~~~
shortestPath.cpp: In function ‘SEXPREC* BGL_dag_shortest_paths(SEXP, SEXP, SEXP, SEXP, SEXP)’:
shortestPath.cpp:136:60: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
136 | typedef graph_traits < Graph_dd >::edge_descriptor Edge;
| ^~~~
shortestPath.cpp: In function ‘SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)’:
shortestPath.cpp:177:81: warning: typedef ‘Graph’ locally defined but not used [-Wunused-local-typedefs]
177 | property< edge_weight_t, double, property< edge_weight2_t, double > > > Graph;
| ^~~~~
shortestPath.cpp:180:39: warning: typedef ‘Edge’ locally defined but not used [-Wunused-local-typedefs]
180 | typedef std::pair < int, int >Edge;
| ^~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘SEXPREC* BGL_bellman_ford_shortest_paths(SEXP, SEXP, SEXP, SEXP, SEXP)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:40: note: ‘*((void*)& end +32)’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& i +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:37: note: ‘*((void*)& i +48)’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^
In file included from RBGL.hpp:17,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:129:65: warning: ‘*((void*)(& i)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
129 | inline const T& get(const T* pa, std::ptrdiff_t k) { return pa[k]; }
| ~~^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:37: note: ‘*((void*)(& i)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& ei_end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
shortestPath.cpp:101:54: note: ‘*((void*)& ei_end +32)’ was declared here
101 | graph_traits< EdgeGraph >::edge_iterator ei, ei_end;
| ^~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& ei +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
shortestPath.cpp:101:50: note: ‘*((void*)& ei +48)’ was declared here
101 | graph_traits< EdgeGraph >::edge_iterator ei, ei_end;
| ^~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘SEXPREC* BGL_floyd_warshall_all_pairs_shortest_paths_D(SEXP, SEXP, SEXP, SEXP)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& last +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from shortestPath.cpp:7:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/floyd_warshall_shortest.hpp:101:75: note: ‘*((void*)& last +32)’ was declared here
101 | typename graph_traits< VertexAndEdgeListGraph >::edge_iterator first, last;
| ^~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& first +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from shortestPath.cpp:7:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/floyd_warshall_shortest.hpp:101:68: note: ‘*((void*)& first +48)’ was declared here
101 | typename graph_traits< VertexAndEdgeListGraph >::edge_iterator first, last;
| ^~~~~
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/floyd_warshall_shortest.hpp:113:14: warning: ‘*((void*)(& first)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
113 | if (d[source(*first, g)][target(*first, g)] != inf)
| ~^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/floyd_warshall_shortest.hpp:101:68: note: ‘*((void*)(& first)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ was declared here
101 | typename graph_traits< VertexAndEdgeListGraph >::edge_iterator first, last;
| ^~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list<boost::directedS, double>; DistanceMatrix = Basic2DMatrix<double>; VertexID = boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t, boost::default_color_type>, long unsigned int>; Weight = boost::adj_list_edge_property_map<boost::directed_tag, double, double&, long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property>, boost::edge_weight_t>; BinaryPredicate = std::less<double>; BinaryFunction = boost::closed_plus<double>; Infinity = double; DistanceZero = double]’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& e_end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:101:40: note: ‘*((void*)& e_end +32)’ was declared here
101 | typename Traits2::edge_iterator e, e_end;
| ^~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& e +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:101:37: note: ‘*((void*)& e +48)’ was declared here
101 | typename Traits2::edge_iterator e, e_end;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/shared_array.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/d_ary_heap.hpp:20,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/named_function_params.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/dijkstra_shortest_paths.hpp:20,
from shortestPath.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_array.hpp:201:18: warning: ‘*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
201 | return px[i];
| ~~^
In file included from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:101:37: note: ‘*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double> > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ was declared here
101 | typename Traits2::edge_iterator e, e_end;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:40: note: ‘*((void*)& end +32)’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& i +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:37: note: ‘*((void*)& i +48)’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& e_end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:84:44: note: ‘*((void*)& e_end +32)’ was declared here
84 | typename Traits1::edge_iterator e, e_end;
| ^~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from shortestPath.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& e +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from shortestPath.cpp:4:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:84:41: note: ‘*((void*)& e +48)’ was declared here
84 | typename Traits1::edge_iterator e, e_end;
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:89:41: warning: ‘*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
89 | boost::tie(e2, z) = add_edge(
| ~~~~~~~~^
90 | get(id1, source(*e, g1)) + 1, get(id1, target(*e, g1)) + 1, g2);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c sna.cpp -o sna.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from sna.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
sna.cpp: In function ‘SEXPREC* lambdaSets(SEXP, SEXP, SEXP, SEXP)’:
sna.cpp:161:9: warning: variable ‘res_cap’ set but not used [-Wunused-but-set-variable]
161 | res_cap = get(edge_residual_capacity, flow_g);
| ^~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘SEXPREC* kCliques(SEXP, SEXP, SEXP, SEXP)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& e_end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from sna.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:101:40: note: ‘*((void*)& e_end +32)’ was declared here
101 | typename Traits2::edge_iterator e, e_end;
| ^~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& e +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from sna.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:101:37: note: ‘*((void*)& e +48)’ was declared here
101 | typename Traits2::edge_iterator e, e_end;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/shared_array_property_map.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:27,
from sna.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_array.hpp:201:18: warning: ‘*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
201 | return px[i];
| ~~^
In file included from sna.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:101:37: note: ‘*((void*)(& e)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::property<boost::edge_weight2_t, double, boost::no_property> > > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ was declared here
101 | typename Traits2::edge_iterator e, e_end;
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:112:21: warning: ‘*((void*)& end +32)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
111 | || (vCurr != vEnd
| ~~~~~~~~~~~~~~
112 | && edges BOOST_GRAPH_MEMBER first
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
113 | != x.edges BOOST_GRAPH_MEMBER first);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from sna.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:40: note: ‘*((void*)& end +32)’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from RBGL.hpp:38,
from sna.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& i +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/johnson_all_pairs_shortest.hpp:28,
from sna.cpp:3:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/bellman_ford_shortest_paths.hpp:104:37: note: ‘*((void*)& i +48)’ was declared here
104 | typename GTraits::edge_iterator i, end;
| ^
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c transitive_closure.cpp -o transitive_closure.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:48:40: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
48 | template<class T> T * get_pointer(std::auto_ptr<T> const& p)
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/arg.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/placeholders.hpp:24,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/iterator/iterator_categories.hpp:16,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_traits.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/graph_concepts.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/depth_first_search.hpp:18,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/strong_components.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:17,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:21,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/config/no_tr1/memory.hpp:21,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/get_pointer.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/mem_fn.hpp:25,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/bind/bind.hpp:26,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:16,
from transitive_closure.cpp:16:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adjacency_list.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:255,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/transitive_closure.hpp:21,
from transitive_closure.cpp:16:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp: In function ‘SEXPREC* BGL_transitive_closure_D(SEXP, SEXP, SEXP)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/detail/adj_list_edge_iterator.hpp:80:13: warning: ‘*((void*)& ei +48)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
80 | if (edges BOOST_GRAPH_MEMBER first
| ^~
transitive_closure.cpp:43:33: note: ‘*((void*)& ei +48)’ was declared here
43 | Graph_dd::edge_iterator ei, e_end;
| ^~
transitive_closure.cpp:46:33: warning: ‘*((void*)(& ei)+32).boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >*, std::vector<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> >, std::allocator<boost::detail::stored_edge_property<long unsigned int, boost::property<boost::edge_weight_t, double, boost::no_property> > > > >, long unsigned int, boost::detail::edge_desc_impl<boost::directed_tag, long unsigned int>, long int>::m_src’ may be used uninitialized in this function [-Wmaybe-uninitialized]
46 | INTEGER(eList)[i++] = source(*ei, TC);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/R/R-4.3.1/include" -DNDEBUG -I'/home/biocbuild/R/R-4.3.1/site-library/BH/include' -I/usr/local/include -fPIC -g -O2 -Wall -c wavefront.cpp -o wavefront.o
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:22,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
194 | failed ************ (Pred::************
| ^
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
199 | failed ************ (boost::mpl::not_<Pred>::************
| ^
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
361 | explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
250 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
507 | explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
520 | shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
603 | shared_ptr & operator=( std::auto_ptr<Y> & r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
612 | shared_ptr & operator=( std::auto_ptr<Y> && r )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
614 | this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
In file included from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/scoped_ptr.hpp:13,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/graph/adjacency_list.hpp:22,
from RBGL.hpp:38,
from wavefront.cpp:1:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: ‘template<class> class std::auto_ptr’ is deprecated [-Wdeprecated-declarations]
74 | explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
| ^~~~~~~~
In file included from /usr/include/c++/10.3.1/memory:83,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/detail/shared_count.hpp:27,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/vector_property_map.hpp:14,
from /home/biocbuild/R/R-4.3.1/site-library/BH/include/boost/property_map/property_map.hpp:598,
from RBGL.hpp:17,
from wavefront.cpp:1:
/usr/include/c++/10.3.1/bits/unique_ptr.h:57:28: note: declared here
57 | template<typename> class auto_ptr;
| ^~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/R/R-4.3.1/lib -L/usr/local/lib -o RBGL.so bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o minST.o mincut.o ordering.o planar.o registerSigHandlers.o shortestPath.o sna.o transitive_closure.o wavefront.o -L/home/biocbuild/R/R-4.3.1/lib -lR
installing to /home/biocbuild/R/R-4.3.1/site-library/00LOCK-RBGL/00new/RBGL/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RBGL)