| Back to Multiple platform build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-10-16 11:35:32 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 | 
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 | 
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1251/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mirTarRnaSeq 1.8.0  (landing page) Mercedeh Movassagh 
  | nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
| 
To the developers/maintainers of the mirTarRnaSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: mirTarRnaSeq | 
| Version: 1.8.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings mirTarRnaSeq_1.8.0.tar.gz | 
| StartedAt: 2023-10-15 22:54:36 -0400 (Sun, 15 Oct 2023) | 
| EndedAt: 2023-10-15 22:58:11 -0400 (Sun, 15 Oct 2023) | 
| EllapsedTime: 214.3 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: mirTarRnaSeq.Rcheck | 
| Warnings: 0 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings mirTarRnaSeq_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.
mirTarRnaSeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mirTarRnaSeq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘mirTarRnaSeq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirTarRnaSeq)
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
| name | user | system | elapsed | |
| combiner | 0.003 | 0.004 | 0.008 | |
| corMirnaRna | 0.064 | 0.000 | 0.064 | |
| corMirnaRnaMiranda | 0.096 | 0.024 | 0.120 | |
| downloadMirandaFile | 0 | 0 | 0 | |
| drawCorPlot | 0 | 0 | 0 | |
| drawInterPlots | 0.028 | 0.000 | 0.028 | |
| fdrSig | 0.48 | 0.00 | 0.48 | |
| finInterResult | 0.001 | 0.000 | 0.001 | |
| geneVari | 0.000 | 0.001 | 0.000 | |
| getInputSpecies | 0.222 | 0.015 | 0.239 | |
| glm_gaussian | 0.001 | 0.000 | 0.000 | |
| glm_multi | 0.001 | 0.000 | 0.000 | |
| glm_nb | 0.001 | 0.000 | 0.000 | |
| glm_poisson | 0.001 | 0.000 | 0.000 | |
| glm_zeroinfl | 0.001 | 0.000 | 0.001 | |
| glm_zeroinfl_negbin | 0.000 | 0.000 | 0.001 | |
| glm_zeroinfl_poisson | 0 | 0 | 0 | |
| importMirandaFile | 0 | 0 | 0 | |
| makeFormulaRightSide | 0.000 | 0.000 | 0.001 | |
| miRanComp | 0.06 | 0.02 | 0.08 | |
| miRandaIntersect | 0.014 | 0.000 | 0.015 | |
| mirRnaDensityCor | 0.025 | 0.000 | 0.026 | |
| mirRnaDensityInter | 0.000 | 0.000 | 0.001 | |
| mirRnaHeatmap | 0.646 | 0.008 | 0.654 | |
| mirRnaHeatmapDiff | 0.082 | 0.000 | 0.082 | |
| mirandaIntersectInter | 0.009 | 0.004 | 0.012 | |
| modelAIC | 0.057 | 0.000 | 0.057 | |
| modelCoefficients | 0.000 | 0.001 | 0.001 | |
| modelData | 0.000 | 0.001 | 0.001 | |
| modelModelName | 0.000 | 0.001 | 0.001 | |
| modelModelPvalue | 0.000 | 0.000 | 0.001 | |
| modelTermPvalues | 0.001 | 0.000 | 0.001 | |
| modelsFilter | 0.001 | 0.000 | 0.000 | |
| one2OneRnaMiRNA | 0 | 0 | 0 | |
| plotFit | 0.006 | 0.000 | 0.006 | |
| plotResiduals | 0.007 | 0.000 | 0.007 | |
| plotTerms | 0.003 | 0.000 | 0.002 | |
| runAllMirnaModels | 0.499 | 0.008 | 0.507 | |
| runModels | 0.454 | 0.000 | 0.454 | |
| sampCorRnaMirna | 0.423 | 0.024 | 0.447 | |
| threshSig | 0 | 0 | 0 | |
| threshSigInter | 0.002 | 0.000 | 0.001 | |
| twoTimePoint | 0 | 0 | 0 | |
| twoTimePointSamp | 0 | 0 | 0 | |
| tzTrans | 0.005 | 0.000 | 0.005 | |