| Back to Multiple platform build/check report for BioC 3.17: simplified long | 
  | 
This page was generated on 2023-10-16 11:37:15 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 | 
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 | 
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1251/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| mirTarRnaSeq 1.8.0  (landing page) Mercedeh Movassagh 
  | nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
| 
To the developers/maintainers of the mirTarRnaSeq package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.  | 
| Package: mirTarRnaSeq | 
| Version: 1.8.0 | 
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mirTarRnaSeq_1.8.0.tar.gz | 
| StartedAt: 2023-10-16 04:02:40 -0400 (Mon, 16 Oct 2023) | 
| EndedAt: 2023-10-16 04:05:04 -0400 (Mon, 16 Oct 2023) | 
| EllapsedTime: 144.6 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: mirTarRnaSeq.Rcheck | 
| Warnings: 0 | 
##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings mirTarRnaSeq_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.3 (clang-1403.0.22.14.1)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.
mirTarRnaSeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL mirTarRnaSeq ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/library’ * installing *source* package ‘mirTarRnaSeq’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mirTarRnaSeq)
mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings
| name | user | system | elapsed | |
| combiner | 0.010 | 0.005 | 0.018 | |
| corMirnaRna | 0.115 | 0.018 | 0.163 | |
| corMirnaRnaMiranda | 0.214 | 0.042 | 0.335 | |
| downloadMirandaFile | 0.000 | 0.000 | 0.001 | |
| drawCorPlot | 0 | 0 | 0 | |
| drawInterPlots | 0.044 | 0.001 | 0.061 | |
| fdrSig | 1.234 | 0.019 | 1.646 | |
| finInterResult | 0.003 | 0.000 | 0.005 | |
| geneVari | 0.001 | 0.001 | 0.001 | |
| getInputSpecies | 0.512 | 0.062 | 0.746 | |
| glm_gaussian | 0.001 | 0.001 | 0.001 | |
| glm_multi | 0.001 | 0.001 | 0.001 | |
| glm_nb | 0.000 | 0.001 | 0.001 | |
| glm_poisson | 0.000 | 0.001 | 0.000 | |
| glm_zeroinfl | 0.001 | 0.001 | 0.001 | |
| glm_zeroinfl_negbin | 0.000 | 0.001 | 0.001 | |
| glm_zeroinfl_poisson | 0.001 | 0.001 | 0.000 | |
| importMirandaFile | 0.000 | 0.001 | 0.000 | |
| makeFormulaRightSide | 0.000 | 0.001 | 0.000 | |
| miRanComp | 0.099 | 0.012 | 0.148 | |
| miRandaIntersect | 0.026 | 0.001 | 0.034 | |
| mirRnaDensityCor | 0.044 | 0.004 | 0.059 | |
| mirRnaDensityInter | 0.000 | 0.000 | 0.001 | |
| mirRnaHeatmap | 1.500 | 0.050 | 2.006 | |
| mirRnaHeatmapDiff | 0.159 | 0.006 | 0.222 | |
| mirandaIntersectInter | 0.023 | 0.002 | 0.033 | |
| modelAIC | 0.113 | 0.007 | 0.156 | |
| modelCoefficients | 0.002 | 0.000 | 0.002 | |
| modelData | 0.000 | 0.000 | 0.001 | |
| modelModelName | 0.001 | 0.000 | 0.001 | |
| modelModelPvalue | 0.000 | 0.000 | 0.001 | |
| modelTermPvalues | 0.002 | 0.000 | 0.005 | |
| modelsFilter | 0.000 | 0.000 | 0.001 | |
| one2OneRnaMiRNA | 0.000 | 0.000 | 0.001 | |
| plotFit | 0.013 | 0.002 | 0.021 | |
| plotResiduals | 0.013 | 0.001 | 0.018 | |
| plotTerms | 0.005 | 0.000 | 0.009 | |
| runAllMirnaModels | 1.100 | 0.050 | 1.487 | |
| runModels | 1.202 | 0.023 | 1.871 | |
| sampCorRnaMirna | 0.684 | 0.070 | 1.043 | |
| threshSig | 0.000 | 0.001 | 0.000 | |
| threshSigInter | 0.002 | 0.001 | 0.002 | |
| twoTimePoint | 0 | 0 | 0 | |
| twoTimePointSamp | 0 | 0 | 0 | |
| tzTrans | 0.013 | 0.000 | 0.016 | |