Jacques Serizay
| Snapshot Date: 2023-04-03 14:00:24 -0400 (Mon, 03 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/HiCool |
| git_branch: devel |
| git_last_commit: b492acd |
| git_last_commit_date: 2023-02-16 06:46:56 -0400 (Thu, 16 Feb 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-04-04 11:05:55 -0400 (Tue, 04 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-03-16 r83996) -- "Unsuffered Consequences" | 4554 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-03-15 r83984 ucrt) -- "Unsuffered Consequences" | 4314 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-03-16 r83985) -- "Unsuffered Consequences" | 4311 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HiCool package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCool.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. Note: If "R CMD check" recently failed on the Linux builder over a missing dependency, add the missing dependency to "Suggests" in your DESCRIPTION file. See the Renviron.bioc for details. |
| Package 919/2200 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCool 0.99.4 (landing page) Jacques Serizay
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HiCool |
| Version: 0.99.4 |
| Command: chmod a+r HiCool -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data HiCool |
| StartedAt: 2023-04-03 19:39:21 -0400 (Mon, 03 Apr 2023) |
| EndedAt: 2023-04-03 19:42:45 -0400 (Mon, 03 Apr 2023) |
| EllapsedTime: 203.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
###
### chmod a+r HiCool -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe --arch x64 CMD build --keep-empty-dirs --no-resave-data HiCool
###
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* checking for file 'HiCool/DESCRIPTION' ... OK
* preparing 'HiCool':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HiCool.Rmd' using rmarkdown
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\biocbuild\AppData\Local\R\cache\R\basilisk\1.11.3\HiCool\0.99.4\env
added / updated specs:
- python=3.7.12
The following NEW packages will be INSTALLED:
ca-certificates conda-forge/win-64::ca-certificates-2022.12.7-h5b45459_0
libsqlite conda-forge/win-64::libsqlite-3.40.0-hcfcfb64_0
openssl conda-forge/win-64::openssl-3.1.0-hcfcfb64_0
pip conda-forge/noarch::pip-23.0.1-pyhd8ed1ab_0
python conda-forge/win-64::python-3.7.12-h900ac77_100_cpython
setuptools conda-forge/noarch::setuptools-67.6.1-pyhd8ed1ab_0
sqlite conda-forge/win-64::sqlite-3.40.0-hcfcfb64_0
ucrt conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0
vc conda-forge/win-64::vc-14.3-hb6edc58_10
vs2015_runtime conda-forge/win-64::vs2015_runtime-14.34.31931-h4c5c07a_10
wheel conda-forge/noarch::wheel-0.40.0-pyhd8ed1ab_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: C:\Users\biocbuild\AppData\Local\R\cache\R\basilisk\1.11.3\HiCool\0.99.4\env
added / updated specs:
- python=3.7.12
The following packages will be UPDATED:
ca-certificates conda-forge::ca-certificates-2022.12.~ --> pkgs/main::ca-certificates-2023.01.10-haa95532_0
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 4.12.0
latest version: 23.3.1
Please update conda by running
$ conda update -n base -c defaults conda
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve.
PackagesNotFoundError: The following packages are not available from current channels:
- samtools=1.16.1
- bowtie2=2.5.0
Current channels:
- https://conda.anaconda.org/conda-forge/win-64
- https://conda.anaconda.org/conda-forge/noarch
- https://conda.anaconda.org/bioconda/win-64
- https://conda.anaconda.org/bioconda/noarch
- https://repo.anaconda.com/pkgs/main/win-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/win-64
- https://repo.anaconda.com/pkgs/r/noarch
- https://repo.anaconda.com/pkgs/msys2/win-64
- https://repo.anaconda.com/pkgs/msys2/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
Quitting from lines 71-80 (HiCool.Rmd)
Error: processing vignette 'HiCool.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building 'HiCool.Rmd'
SUMMARY: processing the following file failed:
'HiCool.Rmd'
Error: Vignette re-building failed.
Execution halted