| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:54 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the supraHex package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1995/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| supraHex 1.36.0 (landing page) Hai Fang
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: supraHex |
| Version: 1.36.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:supraHex.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings supraHex_1.36.0.tar.gz |
| StartedAt: 2023-04-11 06:35:29 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 06:36:52 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 83.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: supraHex.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:supraHex.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings supraHex_1.36.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/supraHex.Rcheck' * using R version 4.2.3 (2023-03-15 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'supraHex/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'supraHex' version '1.36.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'supraHex' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
supraHex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL supraHex ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'supraHex' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (supraHex)
supraHex.Rcheck/supraHex-Ex.timings
| name | user | system | elapsed | |
| sBMH | 0.04 | 0.01 | 0.06 | |
| sCompReorder | 2.68 | 0.24 | 2.90 | |
| sDistance | 0.38 | 0.00 | 0.37 | |
| sDmat | 0.42 | 0.00 | 0.43 | |
| sDmatCluster | 0.75 | 0.00 | 0.75 | |
| sDmatMinima | 0.51 | 0.00 | 0.51 | |
| sHexDist | 0.02 | 0.00 | 0.02 | |
| sHexGrid | 0 | 0 | 0 | |
| sHexGridVariant | 0 | 0 | 0 | |
| sHexPolygon | 0.17 | 0.00 | 0.17 | |
| sInitial | 0 | 0 | 0 | |
| sMapOverlay | 0.41 | 0.01 | 0.42 | |
| sNeighAny | 0.00 | 0.02 | 0.02 | |
| sNeighDirect | 0.01 | 0.00 | 0.01 | |
| sPipeline | 0 | 0 | 0 | |
| sTopology | 0.03 | 0.01 | 0.05 | |
| sTrainBatch | 0.06 | 0.00 | 0.06 | |
| sTrainSeq | 0.52 | 0.03 | 0.54 | |
| sTrainology | 0.01 | 0.00 | 0.02 | |
| sWriteData | 0.83 | 0.08 | 0.88 | |
| visColoralpha | 0 | 0 | 0 | |
| visColorbar | 0.01 | 0.00 | 0.02 | |
| visColormap | 0 | 0 | 0 | |
| visCompReorder | 3.79 | 0.70 | 4.49 | |
| visDmatCluster | 0 | 0 | 0 | |
| visDmatHeatmap | 0 | 0 | 0 | |
| visHeatmap | 0.07 | 0.00 | 0.07 | |
| visHeatmapAdv | 0.35 | 0.00 | 0.35 | |
| visHexAnimate | 0 | 0 | 0 | |
| visHexBarplot | 0.98 | 0.02 | 1.00 | |
| visHexComp | 0.31 | 0.01 | 0.33 | |
| visHexGrid | 0.29 | 0.00 | 0.28 | |
| visHexMapping | 1.71 | 0.16 | 1.87 | |
| visHexMulComp | 1.11 | 0.09 | 1.21 | |
| visHexPattern | 2.08 | 0.28 | 2.36 | |
| visKernels | 0.03 | 0.00 | 0.03 | |
| visTreeBSclust | 0 | 0 | 0 | |
| visTreeBootstrap | 0.00 | 0.02 | 0.01 | |
| visVp | 0.02 | 0.01 | 0.03 | |