Philippe Boileau
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/scPCA |
| git_branch: master |
| git_last_commit: 95c4f8f |
| git_last_commit_date: 2022-04-26 12:00:48 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:11:58 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the scPCA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scPCA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1768/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| scPCA 1.11.0 (landing page) Philippe Boileau
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: scPCA |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scPCA |
| StartedAt: 2022-07-07 04:42:31 -0400 (Thu, 07 Jul 2022) |
| EndedAt: 2022-07-07 04:47:52 -0400 (Thu, 07 Jul 2022) |
| EllapsedTime: 320.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data scPCA
###
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* checking for file ‘scPCA/DESCRIPTION’ ... OK
* preparing ‘scPCA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: scPCA
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘scpca_intro.Rmd’ using rmarkdown
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Loading required package: lars
Loaded lars 1.3
Warning in microbenchmark(`Zou et al.` = scPCA(target = toy_df[, 1:30], :
less accurate nanosecond times to avoid potential integer overflows
Coordinate system already present. Adding new coordinate system, which will replace the existing one.
Quitting from lines 403-420 (scpca_intro.Rmd)
Error: processing vignette 'scpca_intro.Rmd' failed with diagnostics:
there is no package called 'splatter'
--- failed re-building ‘scpca_intro.Rmd’
SUMMARY: processing the following file failed:
‘scpca_intro.Rmd’
Error: Vignette re-building failed.
Execution halted