Wenjun Liu
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/sSNAPPY |
| git_branch: RELEASE_3_16 |
| git_last_commit: 483e456 |
| git_last_commit_date: 2023-03-28 20:18:03 -0400 (Tue, 28 Mar 2023) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:20 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the sSNAPPY package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sSNAPPY.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1965/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sSNAPPY 1.2.5 (landing page) Wenjun Liu
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sSNAPPY |
| Version: 1.2.5 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL sSNAPPY |
| StartedAt: 2023-04-10 15:25:51 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 15:27:06 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 74.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL sSNAPPY
###
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* installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’
* installing *source* package ‘sSNAPPY’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c GenePertScore.cpp -o GenePertScore.o
In file included from /home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo:26,
from /home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
from GenePertScore.cpp:2:
/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: #pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed
338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: #pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead
343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: #pragma message: INFO: see the documentation for details
346 | #pragma message ("INFO: see the documentation for details")
| ^
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c code.cpp -o code.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -c normaliseByPermutation.cpp -o normaliseByPermutation.o
In file included from /home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo:26,
from /home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/RcppArmadillo.h:29,
from normaliseByPermutation.cpp:2:
/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo_bits/config.hpp:338:86: note: #pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed
338 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo_bits/config.hpp:343:75: note: #pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead
343 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
/home/biocbuild/bbs-3.16-bioc/R/site-library/RcppArmadillo/include/armadillo_bits/config.hpp:346:61: note: #pragma message: INFO: see the documentation for details
346 | #pragma message ("INFO: see the documentation for details")
| ^
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.16-bioc/R/lib -L/usr/local/lib -o sSNAPPY.so GenePertScore.o RcppExports.o code.o normaliseByPermutation.o -fopenmp -L/home/biocbuild/bbs-3.16-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.16-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.16-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.16-bioc/R/site-library/00LOCK-sSNAPPY/00new/sSNAPPY/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sSNAPPY)