John R. Stevens
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/metahdep |
| git_branch: RELEASE_3_16 |
| git_last_commit: 97ce24c |
| git_last_commit_date: 2022-11-01 11:04:19 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:40 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the metahdep package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1151/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metahdep 1.56.0 (landing page) John R. Stevens
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: metahdep |
| Version: 1.56.0 |
| Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=metahdep.buildbin-libdir metahdep_1.56.0.tar.gz |
| StartedAt: 2023-04-11 08:16:50 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:17:09 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 18.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: metahdep_1.56.0.zip |
| PackageFileSize: 546.2 KiB |
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### Running command:
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### rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=metahdep.buildbin-libdir metahdep_1.56.0.tar.gz
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* installing *source* package 'metahdep' ...
** using staged installation
** libs
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
F:/biocbuild/bbs-3.16-bioc/R/include/Rinternals.h:197:17: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
197 | #define CHAR(x) R_CHAR(x)
| ^~~~~~~~~
| |
| const char *
metahdep.c:471:79: note: in expansion of macro 'CHAR'
471 | index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
| ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
372 | SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
| ~~~~~^~~~~~~~~~~~
gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.56.0.zip
* DONE (metahdep)