| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:09 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the memes package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1131/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| memes 1.6.0 (landing page) Spencer Nystrom
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: memes |
| Version: 1.6.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings memes_1.6.0.tar.gz |
| StartedAt: 2023-04-10 21:45:50 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 21:48:54 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 184.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: memes.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:memes.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings memes_1.6.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/memes.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘memes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘memes’ version ‘1.6.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘memes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
add_sequence 7.082 0.223 7.307
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘core_ame.Rmd’ using ‘UTF-8’... OK
‘core_dreme.Rmd’ using ‘UTF-8’... OK
‘core_fimo.Rmd’ using ‘UTF-8’... OK
‘core_tomtom.Rmd’ using ‘UTF-8’... OK
‘install_guide.Rmd’ using ‘UTF-8’... OK
‘integrative_analysis.Rmd’ using ‘UTF-8’... OK
‘tidy_motifs.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
memes.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL memes ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘memes’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (memes)
memes.Rcheck/memes-Ex.timings
| name | user | system | elapsed | |
| add_sequence | 7.082 | 0.223 | 7.307 | |
| ame_compare_heatmap_methods | 0.932 | 0.072 | 1.005 | |
| check_meme_install | 0.570 | 0.020 | 0.589 | |
| drop_best_match | 0.007 | 0.000 | 0.007 | |
| example_ame | 0.06 | 0.00 | 0.06 | |
| example_ame_large | 0.038 | 0.000 | 0.038 | |
| force_best_match | 0.044 | 0.004 | 0.047 | |
| get_sequence | 0.361 | 0.008 | 0.369 | |
| has_duplicate_motifs | 1.167 | 0.048 | 1.215 | |
| importAme | 0.242 | 0.029 | 0.273 | |
| importDremeXML | 0.263 | 0.000 | 0.263 | |
| importFimo | 0.055 | 0.020 | 0.070 | |
| importMeme | 0.117 | 0.000 | 0.117 | |
| importStremeXML | 0.187 | 0.000 | 0.187 | |
| importTomTomXML | 0.402 | 0.000 | 0.402 | |
| meme_is_installed | 0.052 | 0.000 | 0.052 | |
| nest_tomtom | 0.052 | 0.000 | 0.052 | |
| plot_ame_heatmap | 0.425 | 0.000 | 0.425 | |
| plot_sequence_heatmap | 2.455 | 0.080 | 2.535 | |
| remove_duplicate_motifs | 0.002 | 0.000 | 0.002 | |
| runAme | 0.044 | 0.000 | 0.044 | |
| runDreme | 0.042 | 0.000 | 0.042 | |
| runFimo | 0.042 | 0.000 | 0.042 | |
| runMeme | 0.043 | 0.000 | 0.042 | |
| runTomTom | 0.042 | 0.003 | 0.046 | |
| update_best_match | 0.093 | 0.001 | 0.093 | |
| view_tomtom_hits | 0.892 | 0.003 | 0.896 | |
| write_fasta | 0.002 | 0.000 | 0.002 | |