Pierre Khoueiry
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/fcScan |
| git_branch: RELEASE_3_16 |
| git_last_commit: 5c1bb30 |
| git_last_commit_date: 2022-11-01 11:20:19 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:33 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the fcScan package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 667/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| fcScan 1.12.0 (landing page) Pierre Khoueiry
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: fcScan |
| Version: 1.12.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings fcScan_1.12.0.tar.gz |
| StartedAt: 2023-04-11 01:27:23 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 01:42:13 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 889.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: fcScan.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fcScan.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings fcScan_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/fcScan.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.12.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getCluster 0.36 0.01 12.92
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
fcScan.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL fcScan ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'fcScan' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fcScan)
fcScan.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomeInfoDb
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.38678 secs
Sites in condition do not match sites in data
3 entries loaded
Running getCluster using 1 threads
Time difference of 14.12205 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.36837 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.46602 secs
17 entries loaded
Running getCluster using 1 threads
No cluster found
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.08441 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.72083 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.36006 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.18651 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.42897 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.40437 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.46962 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.67292 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.85502 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.47256 secs
10 entries loaded
Running getCluster using 1 threads
Time difference of 13.61094 secs
10 entries loaded
Running getCluster using 1 threads
No cluster found
10 entries loaded
Running getCluster using 1 threads
Time difference of 14.44575 secs
16 entries loaded
Running getCluster using 1 threads
Time difference of 14.75616 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.56779 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 14.01643 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.26237 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.73391 secs
6 entries loaded
Running getCluster using 1 threads
Time difference of 13.79797 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.44519 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.23447 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.93519 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.93499 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.75038 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.71467 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.59739 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.6795 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.30051 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 16.08879 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.6281 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.34395 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.01976 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.16761 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.69127 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 15.33111 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.81456 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.68629 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 14.63004 secs
17 entries loaded
Running getCluster using 1 threads
Time difference of 13.79487 secs
RUNIT TEST PROTOCOL -- Tue Apr 11 01:41:55 2023
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
16.06 1.48 626.07
fcScan.Rcheck/fcScan-Ex.timings
| name | user | system | elapsed | |
| getCluster | 0.36 | 0.01 | 12.92 | |