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This page was generated on 2023-04-12 11:05:29 -0400 (Wed, 12 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for ctgGEM on palomino4


To the developers/maintainers of the ctgGEM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ctgGEM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 452/2183HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ctgGEM 1.10.0  (landing page)
USD Biomedical Engineering
Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)
git_url: https://git.bioconductor.org/packages/ctgGEM
git_branch: RELEASE_3_16
git_last_commit: 4e46726
git_last_commit_date: 2022-11-01 11:21:23 -0400 (Tue, 01 Nov 2022)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  ERROR    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  ERROR    ERROR  skippedskipped
lconwaymacOS 12.5.1 Monterey / x86_64  ERROR    ERROR  skippedskipped

Summary

Package: ctgGEM
Version: 1.10.0
Command: chmod a+r ctgGEM -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ctgGEM
StartedAt: 2023-04-10 18:01:26 -0400 (Mon, 10 Apr 2023)
EndedAt: 2023-04-10 18:01:29 -0400 (Mon, 10 Apr 2023)
EllapsedTime: 2.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r ctgGEM -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ctgGEM
###
##############################################################################
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* checking for file 'ctgGEM/DESCRIPTION' ... OK
* preparing 'ctgGEM':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'ctgGEM' ...
** using staged installation
** R
Error in .install_package_code_files(".", instdir) : 
files in 'Collate' field missing from 'F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpEZROM6/Rbuilda842f33414a/ctgGEM/R':
  zzz.R
ERROR: unable to collate and parse R files for package 'ctgGEM'
* removing 'F:/biocbuild/bbs-3.16-bioc/tmpdir/RtmpEZROM6/Rinsta84328050bd/ctgGEM'
      -----------------------------------
ERROR: package installation failed