| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:23 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the Xeva package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Xeva.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2171/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Xeva 1.14.0 (landing page) Benjamin Haibe-Kains
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: Xeva |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings Xeva_1.14.0.tar.gz |
| StartedAt: 2023-04-11 00:52:32 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 00:56:42 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 250.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Xeva.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:Xeva.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings Xeva_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/Xeva.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘Xeva/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Xeva’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Xeva’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 31 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘Xeva.Rnw’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.16-bioc/meat/Xeva.Rcheck/00check.log’ for details.
Xeva.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL Xeva ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘Xeva’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Xeva)
Xeva.Rcheck/Xeva-Ex.timings
| name | user | system | elapsed | |
| ABC | 0.004 | 0.000 | 0.004 | |
| AUC | 0.007 | 0.008 | 0.015 | |
| TGI | 0 | 0 | 0 | |
| addExperimentalDesign | 0.093 | 0.000 | 0.093 | |
| angle | 0.003 | 0.003 | 0.006 | |
| batchInfo | 0.098 | 0.000 | 0.098 | |
| createXevaSet | 0.754 | 0.056 | 0.811 | |
| dosePlot | 0.254 | 0.000 | 0.254 | |
| downloadXevaSet | 0.026 | 0.000 | 0.586 | |
| drugInform | 0.085 | 0.000 | 0.086 | |
| drugSensitivitySig | 0.277 | 0.032 | 0.308 | |
| getExperiment | 0.118 | 0.000 | 0.118 | |
| getMolecularProfiles | 0.082 | 0.000 | 0.082 | |
| lmm | 0.07 | 0.00 | 0.07 | |
| mRECIST | 0.001 | 0.000 | 0.001 | |
| modelInfo | 0.088 | 0.000 | 0.088 | |
| plotPDX | 0.970 | 0.044 | 1.014 | |
| plotmRECIST | 1.614 | 0.024 | 1.637 | |
| response | 0.122 | 0.000 | 0.123 | |
| selectModelIds | 0.141 | 0.000 | 0.142 | |
| sensitivity | 0.094 | 0.004 | 0.098 | |
| setResponse | 1.755 | 0.012 | 1.766 | |
| slope | 0.009 | 0.000 | 0.008 | |
| subsetXeva | 0.155 | 0.012 | 0.168 | |
| summarizeMolecularProfiles | 0.114 | 0.004 | 0.118 | |
| summarizeResponse | 0.151 | 0.012 | 0.163 | |
| waterfall | 0.734 | 0.020 | 0.754 | |