Multiple platform build/check report for BioC 3.16 - BUILD results for XCIR on palomino4

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This page was generated on 2023-04-12 11:05:58 -0400 (Wed, 12 Apr 2023).

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 20.04.5 LTS)	x86_64	4.2.3 (2023-03-15) -- "Shortstop Beagle"	4502
palomino4	Windows Server 2022 Datacenter	x64	4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle"	4282
lconway	macOS 12.5.1 Monterey	x86_64	4.2.3 (2023-03-15) -- "Shortstop Beagle"	4310
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for XCIR on palomino4

To the developers/maintainers of the XCIR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XCIR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

~~XCIR 1.12.0~~ (landing page)
Renan Sauteraud

Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023)

git_url: https://git.bioconductor.org/packages/XCIR

git_branch: RELEASE_3_16

git_last_commit: 089f40b

git_last_commit_date: 2022-11-01 11:20:01 -0400 (Tue, 01 Nov 2022)

nebbiolo2

Linux (Ubuntu 20.04.5 LTS) / x86_64

ERROR

skipped

palomino4

Windows Server 2022 Datacenter / x64

ERROR

skipped

lconway

macOS 12.5.1 Monterey / x86_64

ERROR

skipped

Summary

Package: XCIR

Version: 1.12.0

Command: chmod a+r XCIR -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data XCIR

StartedAt: 2023-04-10 22:21:43 -0400 (Mon, 10 Apr 2023)

EndedAt: 2023-04-10 22:22:47 -0400 (Mon, 10 Apr 2023)

EllapsedTime: 63.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r XCIR -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data XCIR
###
##############################################################################
##############################################################################


* checking for file 'XCIR/DESCRIPTION' ... OK
* preparing 'XCIR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'xcir_intro.Rmd' using knitr
Quitting from lines 146-147 (xcir_intro.Rmd) 
Error: processing vignette 'xcir_intro.Rmd' failed with diagnostics:
object 'pvalue' not found
--- failed re-building 'xcir_intro.Rmd'

SUMMARY: processing the following file failed:
  'xcir_intro.Rmd'

Error: Vignette re-building failed.
Execution halted