Sandro Morganella
| Snapshot Date: 2023-04-10 14:00:05 -0400 (Mon, 10 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/VegaMC |
| git_branch: RELEASE_3_16 |
| git_last_commit: 867716a |
| git_last_commit_date: 2022-11-01 11:06:49 -0400 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:05:57 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the VegaMC package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VegaMC.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2141/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| VegaMC 3.36.0 (landing page) Sandro Morganella
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: VegaMC |
| Version: 3.36.0 |
| Command: rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=VegaMC.buildbin-libdir VegaMC_3.36.0.tar.gz |
| StartedAt: 2023-04-11 08:57:51 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 08:58:25 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 34.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: VegaMC_3.36.0.zip |
| PackageFileSize: 1.707 MiB |
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### Running command:
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### rm -rf VegaMC.buildbin-libdir && mkdir VegaMC.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --build --library=VegaMC.buildbin-libdir VegaMC_3.36.0.tar.gz
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* installing *source* package 'VegaMC' ...
** using staged installation
** libs
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c run_vegaMC.c -o run_vegaMC.o
run_vegaMC.c: In function 'read_params':
run_vegaMC.c:618:18: warning: unused variable 'brkt' [-Wunused-variable]
618 | char *elem, *brkt;
| ^~~~
run_vegaMC.c: In function 'load_data':
run_vegaMC.c:534:32: warning: 'chr' may be used uninitialized in this function [-Wmaybe-uninitialized]
534 | temp_probe->chromosome = chr;
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
run_vegaMC.c:535:30: warning: 'position' may be used uninitialized in this function [-Wmaybe-uninitialized]
535 | temp_probe->position = position;
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
run_vegaMC.c:564:14: warning: 'first_probe' may be used uninitialized in this function [-Wmaybe-uninitialized]
564 | prev_chr = temp_probe->chromosome;
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
run_vegaMC.c: In function 'call_VegaMC':
run_vegaMC.c:466:38: warning: 'first_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
466 | seg_chromosomes[j] = (tmp->chromosome) + 1;
| ~~~~^~~~~~~~~~~~~
run_vegaMC.c:435:32: warning: 'prev_seg' may be used uninitialized in this function [-Wmaybe-uninitialized]
435 | prev_seg->next = tmp;
| ~~~~~~~~~~~~~~~^~~~~
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c sort_data.c -o sort_data.o
gcc -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c vegaMC.c -o vegaMC.o
vegaMC.c: In function 'heap_delete':
vegaMC.c:235:10: warning: variable 'deleted' set but not used [-Wunused-but-set-variable]
235 | node deleted;
| ^~~~~~~
vegaMC.c: In function 'init_trivial_segmentation':
vegaMC.c:592:15: warning: variable 'index' set but not used [-Wunused-but-set-variable]
592 | int i, j, index;
| ^~~~~
gcc -shared -s -static-libgcc -o VegaMC.dll tmp.def run_vegaMC.o sort_data.o vegaMC.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/VegaMC.buildbin-libdir/00LOCK-VegaMC/00new/VegaMC/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'VegaMC' as VegaMC_3.36.0.zip
* DONE (VegaMC)