| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:47 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RCASPAR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCASPAR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1610/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCASPAR 1.44.0 (landing page) Douaa Mugahid
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: RCASPAR |
| Version: 1.44.0 |
| Command: F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RCASPAR.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings RCASPAR_1.44.0.tar.gz |
| StartedAt: 2023-04-11 04:59:57 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 05:00:29 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 31.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: RCASPAR.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:RCASPAR.install-out.txt --library=F:\biocbuild\bbs-3.16-bioc\R\library --no-vignettes --timings RCASPAR_1.44.0.tar.gz
###
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* using log directory 'F:/biocbuild/bbs-3.16-bioc/meat/RCASPAR.Rcheck'
* using R version 4.2.3 (2023-03-15 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'RCASPAR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RCASPAR' version '1.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RCASPAR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
kmplt_svrl: no visible global function definition for 'lines'
kmplt_svrl: no visible global function definition for 'legend'
logrnk: no visible global function definition for 'pchisq'
pltprior: no visible global function definition for 'persp'
weights_BLH: no visible global function definition for 'optim'
Undefined global functions or variables:
legend lines optim pchisq persp
Consider adding
importFrom("graphics", "legend", "lines", "persp")
importFrom("stats", "optim", "pchisq")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'F:/biocbuild/bbs-3.16-bioc/meat/RCASPAR.Rcheck/00check.log'
for details.
RCASPAR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL RCASPAR ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library' * installing *source* package 'RCASPAR' ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCASPAR)
RCASPAR.Rcheck/RCASPAR-Ex.timings
| name | user | system | elapsed | |
| Bergamaschi | 0.01 | 0.00 | 0.01 | |
| RCASPAR-package | 0.24 | 0.07 | 0.30 | |
| STpredictor_BLH | 0.02 | 0.01 | 0.03 | |
| STpredictor_xvBLH | 0.26 | 0.00 | 0.27 | |
| deriv_weight_estimator_BLH | 0 | 0 | 0 | |
| deriv_weight_estimator_BLH_noprior | 0.00 | 0.02 | 0.02 | |
| kmplt | 0 | 0 | 0 | |
| kmplt_svrl | 0 | 0 | 0 | |
| logrnk | 0 | 0 | 0 | |
| pltgamma | 0 | 0 | 0 | |
| pltprior | 0 | 0 | 0 | |
| simpson | 0 | 0 | 0 | |
| survData | 0 | 0 | 0 | |
| survivAURC | 0.08 | 0.01 | 0.10 | |
| survivROC | 0.03 | 0.00 | 0.03 | |
| trapezoid | 0 | 0 | 0 | |
| weight_estimator_BLH | 0 | 0 | 0 | |
| weight_estimator_BLH_noprior | 0 | 0 | 0 | |
| weights_BLH | 0 | 0 | 0 | |
| weights_xvBLH | 0.03 | 0.00 | 0.03 | |