InterMine Team
| Snapshot Date: 2022-07-06 14:00:06 -0400 (Wed, 06 Jul 2022) |
| git_url: https://git.bioconductor.org/packages/InterMineR |
| git_branch: master |
| git_last_commit: c3f77cf |
| git_last_commit_date: 2022-04-26 11:43:08 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.16 |
|
This page was generated on 2022-07-07 11:11:20 -0400 (Thu, 07 Jul 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" | 4343 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" | 4148 |
| lconway | macOS 12.2.1 Monterey | x86_64 | 4.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" | 4160 |
| kjohnson | macOS 12.4 Monterey | arm64 | 4.2.0 Patched (2022-06-09 r82473) -- "Vigorous Calisthenics" | 3115 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the InterMineR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InterMineR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 961/2124 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| InterMineR 1.19.0 (landing page) InterMine Team
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| lconway | macOS 12.2.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson | macOS 12.4 Monterey / arm64 | OK | ERROR | skipped | skipped | |||||||||
| Package: InterMineR |
| Version: 1.19.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data InterMineR |
| StartedAt: 2022-07-06 23:02:53 -0400 (Wed, 06 Jul 2022) |
| EndedAt: 2022-07-06 23:03:40 -0400 (Wed, 06 Jul 2022) |
| EllapsedTime: 46.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data InterMineR
###
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* checking for file ‘InterMineR/DESCRIPTION’ ... OK
* preparing ‘InterMineR’:
* checking DESCRIPTION meta-information ... OK
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item'
Warning: /private/tmp/Rtmp9ndwTA/Rbuilde8051505248d/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item'
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘InterMineR.Rmd’ using rmarkdown
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'subtract'
Warning: multiple methods tables found for 'intersect'
Attaching package: 'InterMineR'
The following objects are masked from 'package:base':
intersect, union
Loading required package: Gviz
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called 'Gviz'
Quitting from lines 477-491 (InterMineR.Rmd)
Error: processing vignette 'InterMineR.Rmd' failed with diagnostics:
could not find function "AnnotationTrack"
--- failed re-building ‘InterMineR.Rmd’
SUMMARY: processing the following file failed:
‘InterMineR.Rmd’
Error: Vignette re-building failed.
Execution halted