| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:07 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the IMPCdata package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IMPCdata.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 968/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IMPCdata 1.34.0 (landing page) Jeremy Mason
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: IMPCdata |
| Version: 1.34.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings IMPCdata_1.34.0.tar.gz |
| StartedAt: 2023-04-10 21:23:59 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 21:28:30 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 270.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMPCdata.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:IMPCdata.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings IMPCdata_1.34.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/IMPCdata.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘IMPCdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘IMPCdata’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMPCdata’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getPhenCenters 0.261 0.017 18.385
getProcedures 0.124 0.012 6.882
printProcedures 0.121 0.007 6.261
printPipelines 0.115 0.009 5.172
printPhenCenters 0.034 0.000 5.170
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘IMPCdata.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
IMPCdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL IMPCdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘IMPCdata’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMPCdata)
IMPCdata.Rcheck/IMPCdata-Ex.timings
| name | user | system | elapsed | |
| getAlleles | 0.124 | 0.010 | 4.221 | |
| getGenes | 0.108 | 0.004 | 3.833 | |
| getIMPCDataset | 0.190 | 0.011 | 4.414 | |
| getIMPCTable | 0.065 | 0.008 | 3.662 | |
| getName | 0.010 | 0.007 | 0.858 | |
| getParameters | 0.127 | 0.006 | 4.754 | |
| getPhenCenters | 0.261 | 0.017 | 18.385 | |
| getPipelines | 0.132 | 0.007 | 4.891 | |
| getProcedures | 0.124 | 0.012 | 6.882 | |
| getStrains | 0.066 | 0.007 | 3.572 | |
| getZygosities | 0.026 | 0.000 | 0.613 | |
| printAlleles | 0.116 | 0.006 | 3.825 | |
| printGenes | 0.111 | 0.003 | 3.669 | |
| printParameters | 0.095 | 0.009 | 4.137 | |
| printPhenCenters | 0.034 | 0.000 | 5.170 | |
| printPipelines | 0.115 | 0.009 | 5.172 | |
| printProcedures | 0.121 | 0.007 | 6.261 | |
| printStrains | 0.063 | 0.000 | 3.278 | |