| Back to Multiple platform build/check report for BioC 3.16: simplified long |
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This page was generated on 2023-04-12 11:05:07 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HilbertCurve package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 911/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HilbertCurve 1.28.0 (landing page) Zuguang Gu
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: HilbertCurve |
| Version: 1.28.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings HilbertCurve_1.28.0.tar.gz |
| StartedAt: 2023-04-10 21:16:39 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 21:20:18 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 218.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HilbertCurve.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:HilbertCurve.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings HilbertCurve_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/HilbertCurve.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘HilbertCurve/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HilbertCurve’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HilbertCurve’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 9.916 0.083 10.001
hc_layer-GenomicHilbertCurve-method 8.351 0.244 8.596
GenomicHilbertCurve 6.265 0.352 7.106
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test-all.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HilbertCurve.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
HilbertCurve.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL HilbertCurve ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘HilbertCurve’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HilbertCurve)
HilbertCurve.Rcheck/tests/test-all.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
>
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
>
> proc.time()
user system elapsed
3.903 0.279 4.165
HilbertCurve.Rcheck/HilbertCurve-Ex.timings
| name | user | system | elapsed | |
| GenomicHilbertCurve-class | 0 | 0 | 0 | |
| GenomicHilbertCurve | 6.265 | 0.352 | 7.106 | |
| HilbertCurve-class | 0 | 0 | 0 | |
| HilbertCurve | 0.546 | 0.029 | 0.574 | |
| default_overlay | 0 | 0 | 0 | |
| hc_centered_text-HilbertCurve-method | 0.101 | 0.000 | 0.102 | |
| hc_layer-GenomicHilbertCurve-method | 8.351 | 0.244 | 8.596 | |
| hc_layer-HilbertCurve-method | 9.916 | 0.083 | 10.001 | |
| hc_layer-dispatch | 0.000 | 0.000 | 0.001 | |
| hc_level-HilbertCurve-method | 0.025 | 0.000 | 0.024 | |
| hc_map-GenomicHilbertCurve-method | 2.889 | 0.001 | 2.889 | |
| hc_normal_points-HilbertCurve-method | 0 | 0 | 0 | |
| hc_offset-HilbertCurve-method | 0.009 | 0.000 | 0.009 | |
| hc_png-HilbertCurve-method | 3.333 | 0.024 | 3.356 | |
| hc_points-GenomicHilbertCurve-method | 0.310 | 0.000 | 0.311 | |
| hc_points-HilbertCurve-method | 0.491 | 0.004 | 0.495 | |
| hc_points-dispatch | 0 | 0 | 0 | |
| hc_polygon-GenomicHilbertCurve-method | 0.375 | 0.000 | 0.375 | |
| hc_polygon-HilbertCurve-method | 0.093 | 0.000 | 0.093 | |
| hc_polygon-dispatch | 0 | 0 | 0 | |
| hc_rect-GenomicHilbertCurve-method | 0.281 | 0.000 | 0.282 | |
| hc_rect-HilbertCurve-method | 0.081 | 0.000 | 0.081 | |
| hc_rect-dispatch | 0 | 0 | 0 | |
| hc_segmented_points-HilbertCurve-method | 0 | 0 | 0 | |
| hc_segments-GenomicHilbertCurve-method | 0.447 | 0.000 | 0.447 | |
| hc_segments-HilbertCurve-method | 0.082 | 0.000 | 0.082 | |
| hc_segments-dispatch | 0 | 0 | 0 | |
| hc_text-GenomicHilbertCurve-method | 0.232 | 0.000 | 0.232 | |
| hc_text-HilbertCurve-method | 0.062 | 0.000 | 0.062 | |
| hc_text-dispatch | 0 | 0 | 0 | |
| is_white | 0 | 0 | 0 | |
| show-HilbertCurve-method | 0.004 | 0.004 | 0.007 | |
| unzoom-HilbertCurve-method | 0.005 | 0.000 | 0.005 | |
| zoom-HilbertCurve-method | 0.006 | 0.000 | 0.006 | |