| Back to Multiple platform build/check report for BioC 3.16: simplified long |
|
This page was generated on 2023-04-12 11:06:11 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| palomino4 | Windows Server 2022 Datacenter | x64 | 4.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" | 4282 |
| lconway | macOS 12.5.1 Monterey | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4310 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 926/2183 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.4.3 (landing page) Matineh Rahmatbakhsh
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino4 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.5.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.4.3 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.4.3.tar.gz |
| StartedAt: 2023-04-10 20:41:45 -0400 (Mon, 10 Apr 2023) |
| EndedAt: 2023-04-10 20:47:32 -0400 (Mon, 10 Apr 2023) |
| EllapsedTime: 346.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.4.3.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.16-bioc/meat/HPiP.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.4.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
FSmethod 30.742 1.611 33.718
var_imp 30.582 1.575 32.259
corr_plot 29.698 1.546 31.805
pred_ensembel 11.782 0.782 8.410
enrichfindP 0.315 0.039 51.145
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.16-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.2.3 (2023-03-15) -- "Shortstop Beagle"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 97.456469
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 97.251205
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 95.355770
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 97.550631
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 102.311744
final value 93.109890
converged
Fitting Repeat 1
# weights: 305
initial value 104.349143
iter 10 value 94.112907
final value 94.112903
converged
Fitting Repeat 2
# weights: 305
initial value 120.391109
iter 10 value 94.112905
iter 10 value 94.112904
iter 10 value 94.112904
final value 94.112904
converged
Fitting Repeat 3
# weights: 305
initial value 128.762993
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 100.832597
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 108.534043
iter 10 value 94.112912
final value 94.112903
converged
Fitting Repeat 1
# weights: 507
initial value 95.358007
iter 10 value 94.114061
final value 94.112903
converged
Fitting Repeat 2
# weights: 507
initial value 99.631434
iter 10 value 87.358032
iter 20 value 86.291480
iter 20 value 86.291480
iter 30 value 86.202195
final value 86.202176
converged
Fitting Repeat 3
# weights: 507
initial value 103.999845
iter 10 value 93.540030
iter 20 value 91.779604
iter 30 value 91.745630
final value 91.745549
converged
Fitting Repeat 4
# weights: 507
initial value 101.922621
iter 10 value 93.902526
iter 20 value 93.893780
final value 93.893766
converged
Fitting Repeat 5
# weights: 507
initial value 98.591721
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 97.105193
iter 10 value 94.236723
iter 20 value 89.209797
iter 30 value 86.654957
iter 40 value 86.445795
iter 50 value 85.759547
iter 60 value 84.962928
iter 70 value 83.021319
iter 80 value 82.548816
iter 90 value 82.096743
iter 100 value 82.080832
final value 82.080832
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 98.155200
iter 10 value 93.788560
iter 20 value 90.779726
iter 30 value 87.798755
iter 40 value 84.000920
iter 50 value 83.860280
iter 60 value 83.027005
iter 70 value 82.095888
iter 80 value 82.063765
iter 90 value 82.061597
final value 82.061468
converged
Fitting Repeat 3
# weights: 103
initial value 99.523697
iter 10 value 94.485110
iter 20 value 93.431166
iter 30 value 87.049123
iter 40 value 85.152877
iter 50 value 84.545164
iter 60 value 83.181633
iter 70 value 82.412193
iter 80 value 82.176424
iter 90 value 82.062869
final value 82.061468
converged
Fitting Repeat 4
# weights: 103
initial value 97.450442
iter 10 value 92.731755
iter 20 value 85.503422
iter 30 value 84.474885
iter 40 value 83.970342
iter 50 value 83.215836
iter 60 value 82.120681
iter 70 value 82.083898
iter 80 value 82.076261
iter 90 value 82.063680
final value 82.055289
converged
Fitting Repeat 5
# weights: 103
initial value 100.306617
iter 10 value 94.419541
iter 20 value 91.636004
iter 30 value 87.906904
iter 40 value 86.203754
iter 50 value 84.779332
iter 60 value 82.378684
iter 70 value 81.955314
iter 80 value 81.927519
iter 90 value 81.927291
final value 81.927236
converged
Fitting Repeat 1
# weights: 305
initial value 106.726606
iter 10 value 91.933106
iter 20 value 88.104593
iter 30 value 86.948886
iter 40 value 83.405395
iter 50 value 82.688720
iter 60 value 82.156420
iter 70 value 81.689258
iter 80 value 81.672417
iter 90 value 81.535809
iter 100 value 81.311245
final value 81.311245
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 108.474936
iter 10 value 94.178068
iter 20 value 88.237015
iter 30 value 85.594794
iter 40 value 82.982230
iter 50 value 82.229949
iter 60 value 81.883555
iter 70 value 81.452183
iter 80 value 81.348963
iter 90 value 81.155649
iter 100 value 80.949324
final value 80.949324
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 118.178328
iter 10 value 94.583310
iter 20 value 94.491414
iter 30 value 92.909708
iter 40 value 89.620534
iter 50 value 88.359787
iter 60 value 85.878142
iter 70 value 83.537811
iter 80 value 82.570443
iter 90 value 81.809234
iter 100 value 81.467608
final value 81.467608
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.277679
iter 10 value 94.050445
iter 20 value 90.980562
iter 30 value 84.537999
iter 40 value 82.740568
iter 50 value 82.262829
iter 60 value 82.180275
iter 70 value 81.893676
iter 80 value 81.756021
iter 90 value 81.596550
iter 100 value 81.564435
final value 81.564435
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 104.760844
iter 10 value 95.597365
iter 20 value 83.661311
iter 30 value 82.567904
iter 40 value 82.384418
iter 50 value 81.744189
iter 60 value 81.336480
iter 70 value 81.158686
iter 80 value 81.135862
iter 90 value 80.982677
iter 100 value 80.900502
final value 80.900502
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 112.369116
iter 10 value 93.950591
iter 20 value 85.158540
iter 30 value 83.901638
iter 40 value 83.254299
iter 50 value 82.561772
iter 60 value 81.867975
iter 70 value 80.962692
iter 80 value 80.687276
iter 90 value 80.652758
iter 100 value 80.619684
final value 80.619684
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.101646
iter 10 value 95.589739
iter 20 value 92.544326
iter 30 value 88.236807
iter 40 value 84.765627
iter 50 value 82.136483
iter 60 value 81.614581
iter 70 value 81.372602
iter 80 value 81.223687
iter 90 value 81.183755
iter 100 value 81.160107
final value 81.160107
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.988588
iter 10 value 93.904643
iter 20 value 89.737738
iter 30 value 84.890982
iter 40 value 84.286150
iter 50 value 83.119004
iter 60 value 82.558809
iter 70 value 81.144817
iter 80 value 80.896877
iter 90 value 80.785751
iter 100 value 80.723601
final value 80.723601
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.722495
iter 10 value 94.612562
iter 20 value 94.022819
iter 30 value 88.844892
iter 40 value 86.082935
iter 50 value 85.820078
iter 60 value 85.440297
iter 70 value 83.872305
iter 80 value 82.259537
iter 90 value 81.612396
iter 100 value 81.410899
final value 81.410899
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.839273
iter 10 value 94.311899
iter 20 value 92.194387
iter 30 value 85.114395
iter 40 value 82.324595
iter 50 value 81.919720
iter 60 value 81.610806
iter 70 value 81.410643
iter 80 value 81.360883
iter 90 value 81.210021
iter 100 value 80.797909
final value 80.797909
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 101.206857
final value 94.485668
converged
Fitting Repeat 2
# weights: 103
initial value 104.342826
iter 10 value 94.486104
iter 20 value 93.949348
iter 30 value 93.725140
iter 40 value 93.724438
final value 93.724404
converged
Fitting Repeat 3
# weights: 103
initial value 98.307170
final value 94.485716
converged
Fitting Repeat 4
# weights: 103
initial value 102.891424
final value 94.410924
converged
Fitting Repeat 5
# weights: 103
initial value 102.682716
final value 94.485924
converged
Fitting Repeat 1
# weights: 305
initial value 104.319631
iter 10 value 94.117903
iter 20 value 94.114820
iter 30 value 90.406111
iter 40 value 89.796459
iter 50 value 87.751439
iter 60 value 84.061152
iter 70 value 83.965763
iter 80 value 83.191679
iter 90 value 82.223208
iter 100 value 81.213401
final value 81.213401
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.648678
iter 10 value 94.118454
iter 20 value 93.973050
final value 93.725835
converged
Fitting Repeat 3
# weights: 305
initial value 94.476733
iter 10 value 94.117796
iter 20 value 94.077113
iter 30 value 87.403343
iter 40 value 86.874290
iter 50 value 86.847621
final value 86.847614
converged
Fitting Repeat 4
# weights: 305
initial value 101.952462
iter 10 value 94.118127
iter 20 value 94.114206
iter 30 value 93.195388
iter 40 value 88.923501
final value 88.915733
converged
Fitting Repeat 5
# weights: 305
initial value 95.328512
iter 10 value 94.118173
iter 20 value 94.113964
iter 30 value 94.113229
final value 94.113226
converged
Fitting Repeat 1
# weights: 507
initial value 110.147749
iter 10 value 94.120815
iter 20 value 94.116131
iter 30 value 84.731021
iter 40 value 83.804037
iter 50 value 82.637100
final value 82.636987
converged
Fitting Repeat 2
# weights: 507
initial value 97.072908
iter 10 value 94.491828
iter 20 value 94.467948
iter 30 value 93.685701
iter 40 value 91.961029
iter 50 value 91.960070
iter 60 value 87.015047
iter 70 value 82.191571
iter 80 value 82.051702
iter 90 value 81.847838
iter 100 value 80.924705
final value 80.924705
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 102.275201
iter 10 value 94.130275
iter 20 value 94.100182
iter 30 value 94.098933
iter 40 value 94.026490
iter 50 value 85.794658
iter 60 value 85.585670
iter 70 value 85.283305
final value 85.233556
converged
Fitting Repeat 4
# weights: 507
initial value 98.262724
iter 10 value 94.234969
iter 20 value 94.121913
iter 30 value 92.746114
iter 40 value 87.771906
iter 50 value 86.209604
iter 60 value 85.883664
iter 70 value 85.881415
iter 80 value 85.880538
final value 85.879885
converged
Fitting Repeat 5
# weights: 507
initial value 97.562277
iter 10 value 94.491380
iter 20 value 94.051412
final value 93.725775
converged
Fitting Repeat 1
# weights: 103
initial value 96.135113
iter 10 value 91.070769
iter 20 value 87.588654
iter 30 value 87.573106
iter 40 value 87.569784
final value 87.569773
converged
Fitting Repeat 2
# weights: 103
initial value 99.590589
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 95.158728
final value 94.038251
converged
Fitting Repeat 4
# weights: 103
initial value 109.430674
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 96.753988
final value 94.042012
converged
Fitting Repeat 1
# weights: 305
initial value 104.058417
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 100.404395
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 99.020256
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 115.912144
final value 94.038251
converged
Fitting Repeat 5
# weights: 305
initial value 98.923259
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 126.115999
final value 94.052910
converged
Fitting Repeat 2
# weights: 507
initial value 127.133296
final value 94.038251
converged
Fitting Repeat 3
# weights: 507
initial value 105.910728
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 111.997857
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 114.262983
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 96.123936
iter 10 value 93.954695
iter 20 value 89.857233
iter 30 value 87.666330
iter 40 value 87.570427
iter 50 value 86.805196
iter 60 value 86.737606
iter 70 value 86.670357
iter 80 value 84.532955
iter 90 value 84.483775
iter 100 value 84.389639
final value 84.389639
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 103.460107
iter 10 value 94.032561
iter 20 value 89.917867
iter 30 value 86.347441
iter 40 value 85.246357
iter 50 value 84.713433
iter 60 value 84.626370
iter 70 value 84.593306
final value 84.593286
converged
Fitting Repeat 3
# weights: 103
initial value 96.677952
iter 10 value 94.058537
iter 20 value 94.018545
iter 30 value 87.501492
iter 40 value 86.668041
iter 50 value 85.260353
iter 60 value 85.032502
iter 70 value 84.818403
final value 84.800160
converged
Fitting Repeat 4
# weights: 103
initial value 97.483547
iter 10 value 94.054814
iter 20 value 93.055974
iter 30 value 92.640077
iter 40 value 92.495755
iter 50 value 92.314935
iter 60 value 92.280469
final value 92.280397
converged
Fitting Repeat 5
# weights: 103
initial value 96.645387
iter 10 value 94.046734
iter 20 value 93.275587
iter 30 value 88.522994
iter 40 value 86.267368
iter 50 value 86.174832
iter 60 value 84.132603
iter 70 value 84.049741
iter 80 value 83.845602
final value 83.845504
converged
Fitting Repeat 1
# weights: 305
initial value 100.151748
iter 10 value 94.057328
iter 20 value 93.514764
iter 30 value 88.520508
iter 40 value 87.823467
iter 50 value 85.934296
iter 60 value 85.128769
iter 70 value 84.631360
iter 80 value 83.761440
iter 90 value 82.413399
iter 100 value 81.104839
final value 81.104839
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.331558
iter 10 value 94.363809
iter 20 value 87.447536
iter 30 value 87.249118
iter 40 value 85.816719
iter 50 value 84.326658
iter 60 value 83.174949
iter 70 value 81.839500
iter 80 value 81.622502
iter 90 value 81.546123
iter 100 value 81.461558
final value 81.461558
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.986336
iter 10 value 93.824265
iter 20 value 90.059029
iter 30 value 84.410168
iter 40 value 82.038689
iter 50 value 81.413098
iter 60 value 81.326611
iter 70 value 81.306421
iter 80 value 81.174891
iter 90 value 81.154264
iter 100 value 81.153091
final value 81.153091
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 100.796204
iter 10 value 94.034628
iter 20 value 88.078122
iter 30 value 86.356647
iter 40 value 84.055493
iter 50 value 82.951093
iter 60 value 82.290929
iter 70 value 81.580926
iter 80 value 81.391156
iter 90 value 81.220640
iter 100 value 81.110943
final value 81.110943
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 110.859439
iter 10 value 100.008835
iter 20 value 94.226922
iter 30 value 93.393124
iter 40 value 89.713504
iter 50 value 85.071779
iter 60 value 84.910105
iter 70 value 84.575825
iter 80 value 84.145675
iter 90 value 84.045712
iter 100 value 83.655521
final value 83.655521
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.296677
iter 10 value 95.206236
iter 20 value 90.205091
iter 30 value 83.263417
iter 40 value 82.485225
iter 50 value 81.900099
iter 60 value 81.329797
iter 70 value 81.286046
iter 80 value 81.177794
iter 90 value 81.025237
iter 100 value 80.921503
final value 80.921503
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.635786
iter 10 value 94.418200
iter 20 value 89.761568
iter 30 value 86.658461
iter 40 value 86.525033
iter 50 value 86.206244
iter 60 value 84.758520
iter 70 value 84.449595
iter 80 value 83.961026
iter 90 value 83.661333
iter 100 value 82.831319
final value 82.831319
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 115.002698
iter 10 value 94.804679
iter 20 value 88.365057
iter 30 value 85.473672
iter 40 value 84.848363
iter 50 value 84.097762
iter 60 value 83.986354
iter 70 value 83.778657
iter 80 value 83.077057
iter 90 value 82.305200
iter 100 value 82.169482
final value 82.169482
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.964106
iter 10 value 93.996046
iter 20 value 92.948339
iter 30 value 92.703923
iter 40 value 86.253533
iter 50 value 85.059819
iter 60 value 82.402049
iter 70 value 81.930215
iter 80 value 81.779710
iter 90 value 81.619520
iter 100 value 81.352390
final value 81.352390
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.194902
iter 10 value 94.067530
iter 20 value 93.138563
iter 30 value 88.061238
iter 40 value 85.030299
iter 50 value 82.608054
iter 60 value 82.069442
iter 70 value 81.965696
iter 80 value 81.949433
iter 90 value 81.908483
iter 100 value 81.887391
final value 81.887391
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.086141
final value 94.054689
converged
Fitting Repeat 2
# weights: 103
initial value 100.012674
iter 10 value 94.054475
iter 20 value 94.050196
iter 30 value 93.848096
iter 40 value 87.305164
iter 50 value 86.539740
iter 60 value 86.437824
final value 86.436512
converged
Fitting Repeat 3
# weights: 103
initial value 96.674565
final value 94.054375
converged
Fitting Repeat 4
# weights: 103
initial value 96.603067
final value 94.054829
converged
Fitting Repeat 5
# weights: 103
initial value 99.803576
final value 93.673191
converged
Fitting Repeat 1
# weights: 305
initial value 104.797251
iter 10 value 94.043180
iter 20 value 94.038302
iter 30 value 89.131822
iter 40 value 84.703903
iter 50 value 84.563882
iter 60 value 84.425303
iter 70 value 84.311642
iter 80 value 84.259040
iter 90 value 84.240998
iter 100 value 83.239473
final value 83.239473
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 111.150458
iter 10 value 94.057590
iter 20 value 94.053232
iter 30 value 93.978991
iter 40 value 85.897249
iter 50 value 85.602925
iter 60 value 85.594005
final value 85.593991
converged
Fitting Repeat 3
# weights: 305
initial value 127.729853
iter 10 value 94.042931
iter 20 value 94.038487
iter 30 value 94.038273
iter 40 value 93.843904
iter 50 value 86.036805
final value 86.036800
converged
Fitting Repeat 4
# weights: 305
initial value 100.030577
iter 10 value 94.042534
final value 94.038301
converged
Fitting Repeat 5
# weights: 305
initial value 98.755376
iter 10 value 94.056506
iter 20 value 93.997141
iter 30 value 85.490854
iter 40 value 85.373161
final value 85.373153
converged
Fitting Repeat 1
# weights: 507
initial value 112.207848
iter 10 value 94.046909
iter 20 value 94.039356
iter 30 value 90.104096
iter 40 value 87.161651
iter 50 value 86.588298
iter 60 value 85.764835
iter 70 value 84.321680
iter 80 value 82.924515
iter 90 value 82.696167
iter 100 value 82.684874
final value 82.684874
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.880408
iter 10 value 93.988372
iter 20 value 93.860968
iter 30 value 93.855181
iter 40 value 93.786075
iter 50 value 93.777981
iter 60 value 93.775580
iter 70 value 92.923398
iter 80 value 86.220345
iter 90 value 85.211799
iter 100 value 84.043397
final value 84.043397
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.241491
iter 10 value 93.784099
iter 20 value 93.658145
iter 30 value 93.587756
iter 40 value 92.415505
iter 50 value 92.288246
iter 60 value 92.236631
iter 70 value 92.197042
iter 80 value 92.196469
iter 90 value 92.196401
iter 100 value 92.195759
final value 92.195759
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.906325
iter 10 value 94.063794
iter 20 value 93.995920
iter 30 value 88.961916
iter 40 value 85.728762
iter 50 value 85.440205
iter 60 value 85.435559
iter 70 value 82.918295
iter 80 value 82.878148
iter 90 value 82.482217
iter 100 value 82.420184
final value 82.420184
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 103.348068
iter 10 value 93.953779
iter 20 value 86.751751
iter 30 value 86.373124
iter 40 value 86.368814
iter 50 value 86.356523
iter 60 value 85.637923
final value 85.636473
converged
Fitting Repeat 1
# weights: 103
initial value 97.538099
iter 10 value 90.647111
iter 20 value 87.836316
iter 30 value 87.825153
iter 40 value 87.824716
final value 87.824710
converged
Fitting Repeat 2
# weights: 103
initial value 99.141536
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 104.788365
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.266564
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 101.202945
final value 93.783647
converged
Fitting Repeat 1
# weights: 305
initial value 99.002689
iter 10 value 94.090484
iter 20 value 93.946906
final value 93.946831
converged
Fitting Repeat 2
# weights: 305
initial value 107.636622
iter 10 value 94.228679
final value 94.228678
converged
Fitting Repeat 3
# weights: 305
initial value 113.054869
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 112.759979
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 98.776012
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 108.368825
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 116.784811
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 115.452306
iter 10 value 92.740676
iter 20 value 91.444469
iter 30 value 91.436555
final value 91.436519
converged
Fitting Repeat 4
# weights: 507
initial value 101.662253
iter 10 value 93.607289
final value 93.607287
converged
Fitting Repeat 5
# weights: 507
initial value 105.751549
iter 10 value 94.264346
iter 20 value 94.204903
final value 94.204542
converged
Fitting Repeat 1
# weights: 103
initial value 97.654242
iter 10 value 94.466871
iter 20 value 93.122715
iter 30 value 87.989121
iter 40 value 85.882931
iter 50 value 84.417979
iter 60 value 84.368385
final value 84.368301
converged
Fitting Repeat 2
# weights: 103
initial value 99.824078
iter 10 value 94.216674
iter 20 value 85.017966
iter 30 value 84.044056
iter 40 value 83.095457
iter 50 value 81.600786
iter 60 value 81.332703
iter 70 value 81.194871
iter 80 value 81.096570
final value 81.095867
converged
Fitting Repeat 3
# weights: 103
initial value 100.946151
iter 10 value 94.488570
iter 20 value 94.399845
iter 30 value 87.101762
iter 40 value 84.419473
iter 50 value 83.861574
iter 60 value 83.195704
iter 70 value 82.963432
iter 80 value 82.918466
final value 82.918420
converged
Fitting Repeat 4
# weights: 103
initial value 96.290095
iter 10 value 94.422418
iter 20 value 93.630299
iter 30 value 88.398618
iter 40 value 83.219262
iter 50 value 82.885046
iter 60 value 82.617779
iter 70 value 81.521425
iter 80 value 81.302554
iter 90 value 81.138509
iter 100 value 81.096463
final value 81.096463
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 101.999008
iter 10 value 94.331034
iter 20 value 92.541912
iter 30 value 91.195270
iter 40 value 90.375153
iter 50 value 90.118120
iter 60 value 90.051548
final value 90.050868
converged
Fitting Repeat 1
# weights: 305
initial value 116.007942
iter 10 value 92.892624
iter 20 value 90.836181
iter 30 value 87.431673
iter 40 value 84.414525
iter 50 value 81.531370
iter 60 value 80.179955
iter 70 value 79.736074
iter 80 value 79.640266
iter 90 value 79.282899
iter 100 value 79.103783
final value 79.103783
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 104.667598
iter 10 value 91.357141
iter 20 value 90.457770
iter 30 value 89.951007
iter 40 value 89.537994
iter 50 value 89.414779
iter 60 value 88.861748
iter 70 value 87.795064
iter 80 value 84.894835
iter 90 value 84.479496
iter 100 value 83.511609
final value 83.511609
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 109.610962
iter 10 value 94.111369
iter 20 value 90.458337
iter 30 value 87.585225
iter 40 value 84.207578
iter 50 value 83.087567
iter 60 value 82.801458
iter 70 value 82.439000
iter 80 value 81.972605
iter 90 value 81.833557
iter 100 value 81.820289
final value 81.820289
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 108.140022
iter 10 value 91.722835
iter 20 value 90.104064
iter 30 value 89.958448
iter 40 value 84.132072
iter 50 value 83.084330
iter 60 value 82.690778
iter 70 value 82.465787
iter 80 value 81.732175
iter 90 value 81.253541
iter 100 value 79.981727
final value 79.981727
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 102.571065
iter 10 value 91.697952
iter 20 value 87.090472
iter 30 value 86.210610
iter 40 value 84.914251
iter 50 value 83.427076
iter 60 value 82.533600
iter 70 value 81.938574
iter 80 value 81.306947
iter 90 value 81.241307
iter 100 value 81.108970
final value 81.108970
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 107.520511
iter 10 value 94.464466
iter 20 value 91.290876
iter 30 value 88.315737
iter 40 value 84.799074
iter 50 value 81.195069
iter 60 value 80.025024
iter 70 value 79.845963
iter 80 value 79.496791
iter 90 value 79.311493
iter 100 value 79.102644
final value 79.102644
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 114.713274
iter 10 value 94.369592
iter 20 value 90.454445
iter 30 value 85.325986
iter 40 value 83.814737
iter 50 value 82.712115
iter 60 value 80.984697
iter 70 value 79.926631
iter 80 value 79.388678
iter 90 value 79.267385
iter 100 value 79.001106
final value 79.001106
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 110.785634
iter 10 value 94.437994
iter 20 value 90.260620
iter 30 value 85.912316
iter 40 value 84.861123
iter 50 value 82.804159
iter 60 value 81.331809
iter 70 value 80.959309
iter 80 value 80.506785
iter 90 value 79.873442
iter 100 value 79.648176
final value 79.648176
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 144.315327
iter 10 value 95.157725
iter 20 value 93.483450
iter 30 value 88.151012
iter 40 value 86.080322
iter 50 value 84.873159
iter 60 value 84.031951
iter 70 value 83.957232
iter 80 value 83.307102
iter 90 value 81.661991
iter 100 value 81.112127
final value 81.112127
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.339500
iter 10 value 94.428591
iter 20 value 92.924106
iter 30 value 92.016884
iter 40 value 90.859891
iter 50 value 84.649468
iter 60 value 81.743521
iter 70 value 81.540398
iter 80 value 81.042629
iter 90 value 80.111915
iter 100 value 79.350400
final value 79.350400
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.943507
final value 94.485961
converged
Fitting Repeat 2
# weights: 103
initial value 109.486883
iter 10 value 91.477786
iter 20 value 91.137595
iter 30 value 89.488540
iter 40 value 89.103790
iter 50 value 89.103099
final value 89.102878
converged
Fitting Repeat 3
# weights: 103
initial value 100.196952
final value 94.486981
converged
Fitting Repeat 4
# weights: 103
initial value 102.024271
final value 94.277010
converged
Fitting Repeat 5
# weights: 103
initial value 99.526979
iter 10 value 93.785404
iter 20 value 90.978298
iter 30 value 86.464687
iter 40 value 83.450575
iter 50 value 81.380145
iter 60 value 80.655312
iter 70 value 80.579857
iter 80 value 80.579592
iter 90 value 80.579451
iter 90 value 80.579450
iter 90 value 80.579450
final value 80.579450
converged
Fitting Repeat 1
# weights: 305
initial value 128.714071
iter 10 value 94.489421
iter 20 value 94.166599
iter 30 value 84.218251
iter 40 value 83.232042
iter 50 value 83.082930
iter 60 value 82.967660
iter 70 value 82.525869
iter 80 value 81.284192
iter 90 value 79.133458
iter 100 value 78.029927
final value 78.029927
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 103.301908
iter 10 value 94.489372
iter 20 value 94.298705
iter 30 value 94.207061
iter 40 value 94.205848
iter 50 value 93.799620
iter 60 value 85.682806
iter 70 value 85.053528
iter 80 value 85.027682
iter 90 value 85.020850
iter 100 value 85.020492
final value 85.020492
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.575635
iter 10 value 94.421681
iter 20 value 86.135619
iter 30 value 85.612270
iter 40 value 85.308058
final value 85.305743
converged
Fitting Repeat 4
# weights: 305
initial value 95.500290
iter 10 value 94.486814
final value 94.275662
converged
Fitting Repeat 5
# weights: 305
initial value 111.447314
iter 10 value 94.490356
iter 20 value 94.481224
iter 30 value 85.994723
iter 40 value 84.849998
iter 50 value 84.848799
iter 50 value 84.848799
final value 84.848799
converged
Fitting Repeat 1
# weights: 507
initial value 96.014452
iter 10 value 91.770580
iter 20 value 89.542805
iter 30 value 89.541463
iter 40 value 89.510537
iter 50 value 88.364447
iter 60 value 88.359950
iter 70 value 87.162994
iter 80 value 87.152368
iter 90 value 87.151788
final value 87.151425
converged
Fitting Repeat 2
# weights: 507
initial value 139.954000
iter 10 value 94.285902
iter 20 value 94.278777
iter 30 value 94.278042
iter 40 value 93.943347
iter 50 value 88.613180
iter 60 value 84.060915
iter 70 value 82.767525
iter 80 value 82.635781
iter 90 value 82.599446
iter 100 value 82.598837
final value 82.598837
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 96.517468
iter 10 value 94.488460
iter 20 value 93.831407
iter 30 value 89.676842
iter 40 value 89.671737
iter 50 value 83.112494
iter 60 value 81.578193
iter 70 value 79.819917
iter 80 value 79.790323
iter 90 value 79.751211
iter 100 value 79.749741
final value 79.749741
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.512008
iter 10 value 94.489084
iter 20 value 94.484241
iter 30 value 93.809168
iter 40 value 87.765412
iter 50 value 86.379826
iter 60 value 84.807128
iter 70 value 81.145596
iter 80 value 80.848228
final value 80.847858
converged
Fitting Repeat 5
# weights: 507
initial value 100.131828
iter 10 value 94.283466
iter 20 value 94.278671
iter 30 value 94.277759
iter 40 value 94.277522
iter 50 value 94.250744
iter 60 value 85.439431
iter 70 value 84.833972
iter 80 value 84.819777
iter 90 value 84.322956
iter 100 value 82.386406
final value 82.386406
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.203318
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 101.340261
final value 93.688363
converged
Fitting Repeat 3
# weights: 103
initial value 95.593994
final value 94.484210
converged
Fitting Repeat 4
# weights: 103
initial value 95.146099
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 95.033274
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 106.409863
final value 94.354396
converged
Fitting Repeat 2
# weights: 305
initial value 110.257420
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.159936
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 111.702171
iter 10 value 92.098068
iter 20 value 92.088908
final value 92.088889
converged
Fitting Repeat 5
# weights: 305
initial value 96.579807
iter 10 value 94.356773
iter 20 value 94.313831
final value 94.313818
converged
Fitting Repeat 1
# weights: 507
initial value 99.415206
iter 10 value 93.421730
iter 20 value 85.679419
iter 30 value 84.186842
iter 40 value 84.185890
iter 40 value 84.185890
iter 40 value 84.185889
final value 84.185889
converged
Fitting Repeat 2
# weights: 507
initial value 102.652531
final value 94.354396
converged
Fitting Repeat 3
# weights: 507
initial value 96.142417
final value 94.354395
converged
Fitting Repeat 4
# weights: 507
initial value 95.639516
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 98.396143
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 98.081687
iter 10 value 94.488540
iter 20 value 94.097817
iter 30 value 93.746546
iter 40 value 93.362839
iter 50 value 87.340187
iter 60 value 82.713455
iter 70 value 81.410025
iter 80 value 80.649964
iter 90 value 80.346200
iter 100 value 80.224431
final value 80.224431
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 99.030146
iter 10 value 94.487805
iter 20 value 85.960326
iter 30 value 83.660652
iter 40 value 82.872346
iter 50 value 81.689856
iter 60 value 81.578082
final value 81.573264
converged
Fitting Repeat 3
# weights: 103
initial value 100.087380
iter 10 value 94.486603
iter 20 value 88.627571
iter 30 value 85.828874
iter 40 value 85.660973
iter 50 value 85.358044
iter 60 value 85.274314
iter 70 value 85.075988
iter 80 value 84.872605
iter 90 value 84.855464
final value 84.855462
converged
Fitting Repeat 4
# weights: 103
initial value 96.455636
iter 10 value 94.489473
iter 20 value 93.243298
iter 30 value 91.270564
iter 40 value 88.391060
iter 50 value 87.086280
iter 60 value 86.551573
iter 70 value 86.446571
iter 80 value 86.413048
iter 90 value 86.391384
final value 86.391364
converged
Fitting Repeat 5
# weights: 103
initial value 99.780101
iter 10 value 94.077577
iter 20 value 91.804968
iter 30 value 88.034567
iter 40 value 87.252151
iter 50 value 84.819776
iter 60 value 83.728047
iter 70 value 82.972892
iter 80 value 82.315576
iter 90 value 81.774214
iter 100 value 81.589459
final value 81.589459
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 102.461585
iter 10 value 94.522429
iter 20 value 90.259940
iter 30 value 86.048318
iter 40 value 83.128768
iter 50 value 82.056877
iter 60 value 81.079156
iter 70 value 79.952245
iter 80 value 79.663715
iter 90 value 79.147492
iter 100 value 78.594128
final value 78.594128
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 100.790705
iter 10 value 93.055170
iter 20 value 83.581126
iter 30 value 80.918625
iter 40 value 80.142648
iter 50 value 79.521776
iter 60 value 79.272214
iter 70 value 79.079511
iter 80 value 78.695203
iter 90 value 78.577605
iter 100 value 78.568207
final value 78.568207
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.506877
iter 10 value 94.175733
iter 20 value 89.597027
iter 30 value 85.183651
iter 40 value 84.051039
iter 50 value 83.266594
iter 60 value 83.046545
iter 70 value 82.608368
iter 80 value 82.201553
iter 90 value 82.050204
iter 100 value 81.117462
final value 81.117462
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.231865
iter 10 value 94.713184
iter 20 value 93.856179
iter 30 value 90.218672
iter 40 value 83.732340
iter 50 value 83.585838
iter 60 value 80.988357
iter 70 value 79.560627
iter 80 value 78.585984
iter 90 value 78.380530
iter 100 value 78.270348
final value 78.270348
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 101.883628
iter 10 value 92.460268
iter 20 value 87.752959
iter 30 value 82.276612
iter 40 value 81.740411
iter 50 value 81.367995
iter 60 value 79.802798
iter 70 value 79.318234
iter 80 value 78.944563
iter 90 value 78.624396
iter 100 value 78.572510
final value 78.572510
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.114323
iter 10 value 94.901442
iter 20 value 94.219688
iter 30 value 87.080394
iter 40 value 86.741026
iter 50 value 84.833558
iter 60 value 80.478032
iter 70 value 79.960274
iter 80 value 79.601330
iter 90 value 78.865713
iter 100 value 78.376579
final value 78.376579
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 106.975025
iter 10 value 100.352091
iter 20 value 94.079781
iter 30 value 88.290432
iter 40 value 81.908347
iter 50 value 80.909947
iter 60 value 80.424200
iter 70 value 79.698403
iter 80 value 79.486250
iter 90 value 78.910621
iter 100 value 78.633480
final value 78.633480
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.671422
iter 10 value 94.004343
iter 20 value 89.774867
iter 30 value 88.152937
iter 40 value 86.055828
iter 50 value 85.071939
iter 60 value 84.498277
iter 70 value 80.934023
iter 80 value 80.230021
iter 90 value 80.018769
iter 100 value 79.899391
final value 79.899391
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 106.073842
iter 10 value 94.509674
iter 20 value 88.206828
iter 30 value 83.269346
iter 40 value 82.312653
iter 50 value 81.809060
iter 60 value 80.429949
iter 70 value 79.258084
iter 80 value 78.946535
iter 90 value 78.748146
iter 100 value 78.549250
final value 78.549250
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.632793
iter 10 value 93.285357
iter 20 value 84.647600
iter 30 value 83.832752
iter 40 value 82.745065
iter 50 value 82.253806
iter 60 value 81.421272
iter 70 value 80.937117
iter 80 value 80.053373
iter 90 value 79.653411
iter 100 value 79.315127
final value 79.315127
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.819126
iter 10 value 94.485990
iter 20 value 94.484227
iter 20 value 94.484226
iter 20 value 94.484226
final value 94.484226
converged
Fitting Repeat 2
# weights: 103
initial value 98.046131
final value 94.485887
converged
Fitting Repeat 3
# weights: 103
initial value 95.228451
final value 94.485877
converged
Fitting Repeat 4
# weights: 103
initial value 95.732193
final value 94.485837
converged
Fitting Repeat 5
# weights: 103
initial value 97.359964
final value 94.486337
converged
Fitting Repeat 1
# weights: 305
initial value 115.804293
iter 10 value 94.489145
iter 20 value 94.484392
final value 94.484226
converged
Fitting Repeat 2
# weights: 305
initial value 102.041036
iter 10 value 94.359591
iter 20 value 92.786986
iter 30 value 86.352289
iter 40 value 86.333665
iter 50 value 82.791085
iter 60 value 82.752623
iter 70 value 82.750912
final value 82.750901
converged
Fitting Repeat 3
# weights: 305
initial value 98.358363
iter 10 value 94.488785
iter 20 value 94.484387
final value 94.484262
converged
Fitting Repeat 4
# weights: 305
initial value 105.512754
iter 10 value 94.200818
iter 20 value 94.194420
iter 30 value 86.094593
iter 40 value 85.242270
iter 50 value 85.227676
iter 60 value 85.227242
final value 85.227177
converged
Fitting Repeat 5
# weights: 305
initial value 96.248879
iter 10 value 94.500750
iter 20 value 94.495399
iter 30 value 93.671239
iter 40 value 93.635434
iter 50 value 93.631086
iter 60 value 82.214581
iter 70 value 81.347803
iter 80 value 81.262888
iter 90 value 81.123955
iter 100 value 81.115530
final value 81.115530
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.844020
iter 10 value 94.510230
iter 20 value 94.449574
iter 30 value 86.430411
iter 40 value 86.329506
iter 50 value 86.151929
iter 60 value 85.229228
iter 70 value 85.187152
iter 80 value 84.708755
iter 90 value 82.139394
iter 100 value 81.212276
final value 81.212276
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.231373
iter 10 value 94.491742
iter 20 value 94.433597
iter 30 value 82.848577
iter 40 value 82.698712
iter 50 value 82.315749
iter 60 value 80.498140
iter 70 value 79.876371
iter 80 value 79.847849
iter 90 value 79.845127
iter 100 value 79.844478
final value 79.844478
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 99.195965
iter 10 value 90.006451
iter 20 value 85.257248
iter 30 value 85.230076
iter 40 value 85.206826
iter 50 value 83.935771
iter 60 value 82.912979
iter 70 value 79.909061
iter 80 value 79.287748
iter 90 value 78.877378
iter 100 value 78.693371
final value 78.693371
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.665073
iter 10 value 94.375358
iter 20 value 91.604566
iter 30 value 91.585053
iter 40 value 91.584442
iter 50 value 91.582077
iter 60 value 91.580719
iter 70 value 91.580374
iter 80 value 91.578504
iter 90 value 91.578113
iter 100 value 91.577716
final value 91.577716
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.149011
iter 10 value 94.493847
iter 20 value 94.486242
iter 30 value 93.897402
iter 40 value 93.580409
iter 50 value 93.579192
iter 60 value 93.561199
iter 70 value 82.820383
iter 80 value 82.816762
iter 90 value 82.292942
final value 82.283050
converged
Fitting Repeat 1
# weights: 103
initial value 97.678104
final value 93.810010
converged
Fitting Repeat 2
# weights: 103
initial value 97.189874
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 97.528209
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 95.746764
final value 93.288889
converged
Fitting Repeat 5
# weights: 103
initial value 102.852862
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 97.361071
final value 93.810010
converged
Fitting Repeat 2
# weights: 305
initial value 98.388395
final value 93.915746
converged
Fitting Repeat 3
# weights: 305
initial value 96.576699
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 102.588707
iter 10 value 93.615646
iter 20 value 89.873639
iter 30 value 84.104514
iter 40 value 84.078716
iter 50 value 84.075381
final value 84.075275
converged
Fitting Repeat 5
# weights: 305
initial value 102.448913
iter 10 value 91.050433
iter 20 value 86.315017
final value 86.247138
converged
Fitting Repeat 1
# weights: 507
initial value 110.713769
final value 93.915746
converged
Fitting Repeat 2
# weights: 507
initial value 110.151033
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 105.452298
final value 93.810010
converged
Fitting Repeat 4
# weights: 507
initial value 94.856865
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 108.765370
final value 93.915746
converged
Fitting Repeat 1
# weights: 103
initial value 97.643548
iter 10 value 93.538787
iter 20 value 83.564181
iter 30 value 83.403976
iter 40 value 82.981321
iter 50 value 82.927906
final value 82.927902
converged
Fitting Repeat 2
# weights: 103
initial value 96.903512
iter 10 value 94.104764
iter 20 value 93.453345
iter 30 value 85.007876
iter 40 value 84.251043
iter 50 value 83.759327
iter 60 value 83.694746
iter 70 value 83.408678
iter 80 value 83.376059
final value 83.376055
converged
Fitting Repeat 3
# weights: 103
initial value 98.841138
iter 10 value 94.067836
iter 20 value 94.034309
iter 30 value 93.148878
iter 40 value 86.630981
iter 50 value 85.519226
iter 60 value 83.345268
iter 70 value 81.909800
iter 80 value 81.303513
iter 90 value 81.008962
iter 100 value 80.502717
final value 80.502717
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.652263
iter 10 value 88.150234
iter 20 value 83.792103
iter 30 value 83.150432
iter 40 value 83.042558
iter 50 value 82.928098
final value 82.927902
converged
Fitting Repeat 5
# weights: 103
initial value 109.098020
iter 10 value 94.057580
iter 20 value 93.999979
iter 30 value 85.663654
iter 40 value 85.378745
iter 50 value 83.633864
iter 60 value 83.443313
iter 70 value 83.378665
final value 83.376055
converged
Fitting Repeat 1
# weights: 305
initial value 104.030155
iter 10 value 94.038061
iter 20 value 93.577023
iter 30 value 89.512961
iter 40 value 88.051268
iter 50 value 87.062650
iter 60 value 85.841617
iter 70 value 85.485526
iter 80 value 81.593096
iter 90 value 80.552257
iter 100 value 80.299122
final value 80.299122
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.287442
iter 10 value 93.788812
iter 20 value 86.900080
iter 30 value 83.952381
iter 40 value 81.757239
iter 50 value 80.631179
iter 60 value 79.838966
iter 70 value 79.729444
iter 80 value 79.530332
iter 90 value 79.466931
iter 100 value 79.427729
final value 79.427729
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 102.125668
iter 10 value 94.034196
iter 20 value 92.881889
iter 30 value 88.212704
iter 40 value 86.041242
iter 50 value 84.670467
iter 60 value 83.523810
iter 70 value 83.226720
iter 80 value 82.853554
iter 90 value 81.657196
iter 100 value 80.899283
final value 80.899283
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.693112
iter 10 value 86.329053
iter 20 value 84.067889
iter 30 value 82.775135
iter 40 value 80.931661
iter 50 value 80.344630
iter 60 value 80.096269
iter 70 value 80.024465
iter 80 value 79.808450
iter 90 value 79.531122
iter 100 value 79.293332
final value 79.293332
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 100.581501
iter 10 value 93.063591
iter 20 value 86.466894
iter 30 value 82.487860
iter 40 value 80.380921
iter 50 value 79.616906
iter 60 value 79.107537
iter 70 value 78.946028
iter 80 value 78.846380
iter 90 value 78.808984
iter 100 value 78.803385
final value 78.803385
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 127.209051
iter 10 value 94.415993
iter 20 value 91.862664
iter 30 value 85.665716
iter 40 value 83.843173
iter 50 value 83.024811
iter 60 value 81.792777
iter 70 value 81.510914
iter 80 value 81.154087
iter 90 value 80.723697
iter 100 value 80.539751
final value 80.539751
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.701707
iter 10 value 93.913016
iter 20 value 93.588187
iter 30 value 92.430689
iter 40 value 87.217730
iter 50 value 81.725844
iter 60 value 81.166527
iter 70 value 80.423993
iter 80 value 80.327053
iter 90 value 80.136085
iter 100 value 79.635523
final value 79.635523
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 117.482173
iter 10 value 103.147131
iter 20 value 96.412751
iter 30 value 92.137160
iter 40 value 87.844106
iter 50 value 86.033290
iter 60 value 83.631186
iter 70 value 82.113366
iter 80 value 81.658215
iter 90 value 79.765331
iter 100 value 79.537722
final value 79.537722
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 110.482671
iter 10 value 96.759594
iter 20 value 93.690878
iter 30 value 87.330871
iter 40 value 85.687159
iter 50 value 81.424722
iter 60 value 80.248996
iter 70 value 79.433588
iter 80 value 78.886678
iter 90 value 78.809312
iter 100 value 78.784424
final value 78.784424
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 116.878868
iter 10 value 94.268055
iter 20 value 89.179424
iter 30 value 86.757582
iter 40 value 83.568319
iter 50 value 81.308579
iter 60 value 80.271629
iter 70 value 79.471036
iter 80 value 78.967800
iter 90 value 78.762148
iter 100 value 78.670339
final value 78.670339
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.584480
final value 94.054603
converged
Fitting Repeat 2
# weights: 103
initial value 97.980534
final value 94.054736
converged
Fitting Repeat 3
# weights: 103
initial value 97.216008
final value 94.054591
converged
Fitting Repeat 4
# weights: 103
initial value 108.261969
final value 94.054699
converged
Fitting Repeat 5
# weights: 103
initial value 99.492270
iter 10 value 94.054387
iter 20 value 94.052930
iter 30 value 93.356553
iter 40 value 93.316852
final value 93.315939
converged
Fitting Repeat 1
# weights: 305
initial value 95.294774
iter 10 value 92.805852
iter 20 value 92.780501
iter 30 value 92.778694
iter 40 value 89.922890
iter 50 value 84.256442
iter 60 value 82.267425
iter 70 value 82.237155
iter 80 value 82.233910
iter 90 value 82.229455
iter 100 value 82.228509
final value 82.228509
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 94.953292
iter 10 value 94.058183
iter 20 value 92.780761
iter 30 value 92.568588
iter 40 value 90.642041
iter 50 value 83.922433
iter 60 value 83.915997
iter 70 value 82.118219
iter 80 value 82.115636
iter 90 value 82.106654
iter 100 value 81.629192
final value 81.629192
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 97.957500
iter 10 value 93.609443
iter 20 value 92.999957
iter 30 value 82.331205
iter 40 value 81.396376
iter 50 value 79.171594
iter 60 value 78.161035
iter 70 value 77.710370
iter 80 value 77.694231
iter 90 value 77.682279
iter 100 value 77.571747
final value 77.571747
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 111.052355
iter 10 value 93.945320
iter 20 value 93.300189
iter 30 value 87.416672
iter 40 value 84.367024
iter 50 value 81.783955
iter 60 value 80.998263
iter 70 value 80.052864
iter 80 value 79.885043
iter 90 value 79.862846
iter 100 value 79.861966
final value 79.861966
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.536872
iter 10 value 94.057190
iter 20 value 93.326674
iter 30 value 87.731549
iter 40 value 85.074004
iter 50 value 85.072374
iter 60 value 85.013247
iter 70 value 84.643293
iter 80 value 82.656419
iter 90 value 81.314333
iter 100 value 81.140358
final value 81.140358
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.922437
iter 10 value 93.339041
iter 20 value 93.331229
iter 30 value 93.319406
iter 40 value 93.317188
iter 50 value 89.098173
iter 60 value 85.072834
iter 70 value 84.573079
iter 80 value 83.301269
iter 90 value 83.180250
iter 100 value 83.179927
final value 83.179927
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 113.403370
iter 10 value 93.661150
iter 20 value 90.600503
iter 30 value 90.155991
iter 40 value 90.149609
iter 50 value 89.070246
iter 60 value 83.692727
iter 70 value 81.998872
iter 80 value 80.388349
iter 90 value 79.982102
iter 100 value 79.593271
final value 79.593271
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 97.518288
iter 10 value 94.059375
iter 20 value 93.697868
iter 30 value 86.685092
iter 40 value 86.621931
iter 50 value 86.620969
iter 60 value 86.620064
iter 70 value 86.173168
iter 80 value 81.166377
iter 90 value 79.871273
iter 100 value 78.460513
final value 78.460513
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.292952
iter 10 value 92.765998
iter 20 value 92.594758
iter 30 value 86.201337
iter 40 value 85.646632
iter 50 value 85.549451
iter 60 value 85.188103
iter 70 value 85.185752
iter 80 value 85.143374
iter 90 value 85.140763
iter 100 value 85.140509
final value 85.140509
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 111.313834
iter 10 value 89.229954
iter 20 value 85.293122
iter 30 value 85.291677
iter 40 value 85.176844
iter 50 value 85.161566
iter 60 value 85.161155
iter 70 value 85.158377
final value 85.158314
converged
Fitting Repeat 1
# weights: 305
initial value 131.485618
iter 10 value 117.708036
iter 20 value 108.123259
iter 30 value 104.699262
iter 40 value 103.837411
iter 50 value 103.152516
iter 60 value 102.636573
iter 70 value 102.253626
iter 80 value 101.804803
iter 90 value 101.457671
iter 100 value 101.400407
final value 101.400407
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 135.650206
iter 10 value 116.351420
iter 20 value 108.032955
iter 30 value 107.298395
iter 40 value 106.783176
iter 50 value 103.404730
iter 60 value 101.910094
iter 70 value 101.751212
iter 80 value 101.461723
iter 90 value 101.248490
iter 100 value 100.978609
final value 100.978609
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 148.116760
iter 10 value 117.793012
iter 20 value 115.965491
iter 30 value 115.476707
iter 40 value 112.273207
iter 50 value 109.226299
iter 60 value 107.392718
iter 70 value 106.652895
iter 80 value 104.129479
iter 90 value 102.040478
iter 100 value 101.083638
final value 101.083638
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 137.642882
iter 10 value 117.863092
iter 20 value 109.468081
iter 30 value 108.661063
iter 40 value 108.370734
iter 50 value 107.242980
iter 60 value 105.375647
iter 70 value 105.038120
iter 80 value 104.943073
iter 90 value 103.489930
iter 100 value 102.076846
final value 102.076846
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 131.693624
iter 10 value 117.690961
iter 20 value 108.564841
iter 30 value 107.729320
iter 40 value 105.746763
iter 50 value 105.346342
iter 60 value 105.029100
iter 70 value 105.012552
iter 80 value 104.985547
iter 90 value 104.947813
iter 100 value 103.994881
final value 103.994881
stopped after 100 iterations
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Mon Apr 10 20:47:22 2023
***********************************************
Number of test functions: 7
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures
Number of test functions: 7
Number of errors: 0
Number of failures: 0
Warning messages:
1: `repeats` has no meaning for this resampling method.
2: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
36.481 1.625 83.391
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 30.742 | 1.611 | 33.718 | |
| FreqInteractors | 0.304 | 0.015 | 0.461 | |
| calculateAAC | 0.053 | 0.008 | 0.091 | |
| calculateAutocor | 0.286 | 0.055 | 0.344 | |
| calculateCTDC | 0.076 | 0.004 | 0.081 | |
| calculateCTDD | 0.547 | 0.041 | 0.592 | |
| calculateCTDT | 0.222 | 0.022 | 0.244 | |
| calculateCTriad | 0.346 | 0.025 | 0.372 | |
| calculateDC | 0.077 | 0.011 | 0.088 | |
| calculateF | 0.271 | 0.023 | 0.294 | |
| calculateKSAAP | 0.085 | 0.010 | 0.095 | |
| calculateQD_Sm | 1.703 | 0.129 | 2.023 | |
| calculateTC | 1.661 | 0.176 | 1.845 | |
| calculateTC_Sm | 0.22 | 0.01 | 0.23 | |
| corr_plot | 29.698 | 1.546 | 31.805 | |
| enrichfindP | 0.315 | 0.039 | 51.145 | |
| enrichfind_hp | 0.026 | 0.006 | 3.439 | |
| enrichplot | 0.222 | 0.015 | 0.238 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.081 | 0.014 | 4.433 | |
| getHPI | 0.000 | 0.001 | 0.001 | |
| get_negativePPI | 0.001 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.001 | 0.002 | |
| plotPPI | 0.066 | 0.003 | 0.068 | |
| pred_ensembel | 11.782 | 0.782 | 8.410 | |
| var_imp | 30.582 | 1.575 | 32.259 | |