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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GLAD
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* checking for file ‘GLAD/DESCRIPTION’ ... OK
* preparing ‘GLAD’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘GLAD’ ...
** using staged installation
checking for pkg-config... /opt/homebrew/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GSL... yes
GSL has been found on the operating system
operating system: Darwin
configure: creating ./config.status
config.status: creating src/Makevars

src/Makevars file

PKG_LIBS = -L/usr/local/lib -lgsl -lgslcblas
PKG_CPPFLAGS = -DIS_MAC_OS

** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c BkpInfo.cpp -o BkpInfo.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c HaarSeg.cpp -o HaarSeg.o
HaarSeg.cpp:50:12: warning: variable 'lowSquareSum' set but not used [-Wunused-but-set-variable]
    double lowSquareSum = 0;
           ^
1 warning generated.
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c MoveBkp.cpp -o MoveBkp.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c OutliersGNL.cpp -o OutliersGNL.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c chrBreakpoints.cpp -o chrBreakpoints.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c cutree.cpp -o cutree.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c daglad.cpp -o daglad.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c distance.cpp -o distance.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c filterBkp.cpp -o filterBkp.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c findCluster.cpp -o findCluster.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c glad-utils.cpp -o glad-utils.o
glad-utils.cpp:862:27: warning: unused variable 'it_new_end_NormalCluster' [-Wunused-variable]
    vector<int>::iterator it_new_end_NormalCluster;
                          ^
1 warning generated.
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c hclust.cpp -o hclust.o
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c laws.c -o laws.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DIS_MAC_OS  -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c loopRemove.cpp -o loopRemove.o
clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GLAD.so BkpInfo.o HaarSeg.o MoveBkp.o OutliersGNL.o chrBreakpoints.o cutree.o daglad.o distance.o filterBkp.o findCluster.o glad-utils.o hclust.o laws.o loopRemove.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: ignoring file /usr/local/lib/libgslcblas.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
ld: warning: ignoring file /usr/local/lib/libgsl.a, building for macOS-arm64 but attempting to link with file built for macOS-x86_64
installing to /private/tmp/RtmptdznGG/Rinst77925a6fc5b/00LOCK-GLAD/00new/GLAD/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘GLAD’ in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/private/tmp/RtmptdznGG/Rinst77925a6fc5b/00LOCK-GLAD/00new/GLAD/libs/GLAD.so':
  dlopen(/private/tmp/RtmptdznGG/Rinst77925a6fc5b/00LOCK-GLAD/00new/GLAD/libs/GLAD.so, 0x0006): symbol not found in flat namespace '_gsl_cdf_gaussian_P'
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmptdznGG/Rinst77925a6fc5b/GLAD’
      -----------------------------------
ERROR: package installation failed