Anthony Chiu
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/twoddpcr |
| git_branch: master |
| git_last_commit: 9219f96 |
| git_last_commit_date: 2021-10-26 12:33:20 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:56 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the twoddpcr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2026/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twoddpcr 1.19.0 (landing page) Anthony Chiu
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: twoddpcr |
| Version: 1.19.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:twoddpcr.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings twoddpcr_1.19.0.tar.gz |
| StartedAt: 2022-03-17 20:33:07 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:35:39 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 152.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:twoddpcr.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings twoddpcr_1.19.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/twoddpcr.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'twoddpcr/DESCRIPTION' ... OK
* this is package 'twoddpcr' version '1.19.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'twoddpcr' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggplot.well 8.11 0.66 8.97
knnClassify 7.93 0.09 8.02
gridClassify 5.94 0.23 7.11
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL twoddpcr
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'twoddpcr' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'twoddpcr'
finding HTML links ... done
KRAScounts html
KRASdata html
amplitudes html
basicsSummary html
castSummary html
classCov html
classMeans html
classStats html
clusterCentres html
copiesSummary html
ddpcr html
ddpcrPlate-class html
ddpcrWell-class html
ddpcrWell-methods html
dot-classifyDfOnChannel html
dot-classifyOnChannel html
dot-classwiseMahalanobisRain html
dot-cov html
dot-dependentCols html
dot-essentialDependentCols html
dot-extractWellNames html
dot-getAllSummary html
dot-getChannelCentres html
dot-getClassificationData html
dot-getMutCopies html
dot-getWellNames html
dot-getWtCopies html
dot-isTwoDimDataFrame html
dot-isWideForm html
dot-mahDist html
dot-matrixInverse html
dot-numberOfWells html
dot-renormaliseByChannel html
dot-renormaliseWell html
dot-roundIt html
dot-slice html
dot-totalCopies html
drawBlank html
dropletPlot html
elementType-SimpleList-method html
exportTable html
extractPlateName html
extractWellNames html
facetPlot html
flatPlot html
fullCopiesSummary html
fullCountsSummary html
getCutOff html
ggplot.well html
gridClassify html
heatPlot html
kmeansClassify html
knnClassify html
mahalanobisRain html
mutantCopiesSummary html
numDroplets html
numericInputRow html
parseClusterCounts html
plateClassification html
plateClassificationMethod html
plateSummary html
positiveCounts html
readCSVDataFrame html
relabelClasses html
removeDropletClasses html
renormalisePlate html
sdRain html
setChannelNames html
setDropletVolume html
shinyVis html
shinyVisApp html
shinyVisServer html
shinyVisUI html
sortDataFrame html
sortWells html
textInputRow html
thresholdClassify html
twoddpcr-package html
wellClassification html
wellClassificationMethod html
whiteTheme html
wildTypeCopiesSummary html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (twoddpcr)
Making 'packages.html' ... done
twoddpcr.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 155 ]
>
> proc.time()
user system elapsed
6.82 0.62 7.46
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.24 | 0.08 | 0.32 | |
| basicsSummary | 0 | 0 | 0 | |
| castSummary | 0.02 | 0.00 | 0.02 | |
| classCov | 0.03 | 0.03 | 0.06 | |
| classMeans | 0.02 | 0.05 | 0.06 | |
| classStats | 0.04 | 0.03 | 0.08 | |
| clusterCentres | 0.60 | 0.17 | 0.77 | |
| copiesSummary | 0 | 0 | 0 | |
| ddpcrPlate-class | 0.23 | 0.06 | 0.30 | |
| ddpcrWell-class | 0.02 | 0.00 | 0.02 | |
| ddpcrWell-methods | 0.26 | 0.03 | 0.29 | |
| dropletPlot | 3.52 | 0.20 | 3.72 | |
| exportTable | 0.09 | 0.00 | 0.19 | |
| extractPlateName | 0 | 0 | 0 | |
| extractWellNames | 0 | 0 | 0 | |
| facetPlot | 1.70 | 0.22 | 1.92 | |
| flatPlot | 4.43 | 0.39 | 4.81 | |
| fullCopiesSummary | 0 | 0 | 0 | |
| fullCountsSummary | 0.03 | 0.00 | 0.03 | |
| ggplot.well | 8.11 | 0.66 | 8.97 | |
| gridClassify | 5.94 | 0.23 | 7.11 | |
| heatPlot | 1.89 | 0.13 | 2.03 | |
| kmeansClassify | 1.34 | 0.37 | 2.42 | |
| knnClassify | 7.93 | 0.09 | 8.02 | |
| mahalanobisRain | 0.76 | 0.13 | 0.89 | |
| mutantCopiesSummary | 0.02 | 0.00 | 0.01 | |
| numDroplets | 0.25 | 0.01 | 0.27 | |
| parseClusterCounts | 0.01 | 0.00 | 0.02 | |
| plateClassification | 1.11 | 0.02 | 1.12 | |
| plateClassificationMethod | 0.31 | 0.00 | 0.31 | |
| plateSummary | 1.99 | 0.06 | 2.05 | |
| positiveCounts | 0.03 | 0.00 | 0.03 | |
| readCSVDataFrame | 0.02 | 0.00 | 0.02 | |
| relabelClasses | 0.05 | 0.02 | 0.06 | |
| removeDropletClasses | 0.50 | 0.14 | 0.65 | |
| renormalisePlate | 3.19 | 0.30 | 3.48 | |
| sdRain | 3.34 | 0.07 | 3.42 | |
| setChannelNames | 0 | 0 | 0 | |
| setDropletVolume | 0 | 0 | 0 | |
| sortDataFrame | 0 | 0 | 0 | |
| sortWells | 0.34 | 0.02 | 0.36 | |
| thresholdClassify | 1.96 | 0.03 | 1.99 | |
| wellClassification | 0.03 | 0.00 | 0.03 | |
| wellClassificationMethod | 0.03 | 0.00 | 0.03 | |
| whiteTheme | 1.43 | 0.02 | 1.44 | |
| wildTypeCopiesSummary | 0 | 0 | 0 | |