| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:21:01 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the twoddpcr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2074/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twoddpcr 1.20.0 (landing page) Anthony Chiu
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: twoddpcr |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings twoddpcr_1.20.0.tar.gz |
| StartedAt: 2022-10-18 22:17:03 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 22:19:00 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 117.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings twoddpcr_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/twoddpcr.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
knnClassify 7.280 0.055 7.336
ggplot.well 6.857 0.151 7.010
gridClassify 5.021 0.100 5.121
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 155 ]
>
> proc.time()
user system elapsed
6.281 0.403 6.671
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.520 | 0.020 | 0.541 | |
| basicsSummary | 0.001 | 0.003 | 0.005 | |
| castSummary | 0.012 | 0.007 | 0.019 | |
| classCov | 0.048 | 0.000 | 0.048 | |
| classMeans | 0.233 | 0.004 | 0.237 | |
| classStats | 0.055 | 0.004 | 0.059 | |
| clusterCentres | 0.726 | 0.011 | 0.737 | |
| copiesSummary | 0.005 | 0.000 | 0.005 | |
| ddpcrPlate-class | 0.285 | 0.004 | 0.289 | |
| ddpcrWell-class | 0.025 | 0.000 | 0.025 | |
| ddpcrWell-methods | 0.258 | 0.004 | 0.262 | |
| dropletPlot | 4.666 | 0.148 | 4.814 | |
| exportTable | 0.127 | 0.018 | 0.145 | |
| extractPlateName | 0.000 | 0.000 | 0.001 | |
| extractWellNames | 0 | 0 | 0 | |
| facetPlot | 1.794 | 0.040 | 1.834 | |
| flatPlot | 4.860 | 0.060 | 4.921 | |
| fullCopiesSummary | 0.009 | 0.001 | 0.009 | |
| fullCountsSummary | 0.023 | 0.011 | 0.034 | |
| ggplot.well | 6.857 | 0.151 | 7.010 | |
| gridClassify | 5.021 | 0.100 | 5.121 | |
| heatPlot | 1.317 | 0.011 | 1.330 | |
| kmeansClassify | 1.183 | 0.001 | 1.183 | |
| knnClassify | 7.280 | 0.055 | 7.336 | |
| mahalanobisRain | 0.889 | 0.017 | 0.905 | |
| mutantCopiesSummary | 0.002 | 0.002 | 0.004 | |
| numDroplets | 0.250 | 0.000 | 0.251 | |
| parseClusterCounts | 0.012 | 0.001 | 0.012 | |
| plateClassification | 1.054 | 0.000 | 1.054 | |
| plateClassificationMethod | 0.354 | 0.004 | 0.358 | |
| plateSummary | 2.278 | 0.000 | 2.278 | |
| positiveCounts | 0.023 | 0.000 | 0.023 | |
| readCSVDataFrame | 0.013 | 0.000 | 0.013 | |
| relabelClasses | 0.043 | 0.000 | 0.043 | |
| removeDropletClasses | 0.706 | 0.003 | 0.710 | |
| renormalisePlate | 3.304 | 0.056 | 3.360 | |
| sdRain | 3.666 | 0.012 | 3.677 | |
| setChannelNames | 0.001 | 0.000 | 0.002 | |
| setDropletVolume | 0.000 | 0.000 | 0.001 | |
| sortDataFrame | 0.001 | 0.001 | 0.003 | |
| sortWells | 0.269 | 0.000 | 0.269 | |
| thresholdClassify | 1.556 | 0.004 | 1.560 | |
| wellClassification | 0.018 | 0.004 | 0.021 | |
| wellClassificationMethod | 0.023 | 0.000 | 0.022 | |
| whiteTheme | 1.457 | 0.015 | 1.473 | |
| wildTypeCopiesSummary | 0.002 | 0.002 | 0.005 | |