| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:17 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the sangeranalyseR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sangeranalyseR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1691/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sangeranalyseR 1.4.0 (landing page) Kuan-Hao Chao
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: sangeranalyseR |
| Version: 1.4.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sangeranalyseR_1.4.0.tar.gz && rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sangeranalyseR_1.4.0.zip && rm sangeranalyseR_1.4.0.tar.gz sangeranalyseR_1.4.0.zip |
| StartedAt: 2022-04-12 06:21:26 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:24:11 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 164.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sangeranalyseR_1.4.0.tar.gz && rm -rf sangeranalyseR.buildbin-libdir && mkdir sangeranalyseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sangeranalyseR.buildbin-libdir sangeranalyseR_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sangeranalyseR_1.4.0.zip && rm sangeranalyseR_1.4.0.tar.gz sangeranalyseR_1.4.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
1 41.4M 1 470k 0 0 701k 0 0:01:00 --:--:-- 0:01:00 701k
4 41.4M 4 1986k 0 0 1189k 0 0:00:35 0:00:01 0:00:34 1189k
10 41.4M 10 4367k 0 0 1638k 0 0:00:25 0:00:02 0:00:23 1638k
17 41.4M 17 7596k 0 0 2082k 0 0:00:20 0:00:03 0:00:17 2081k
27 41.4M 27 11.5M 0 0 2545k 0 0:00:16 0:00:04 0:00:12 2545k
39 41.4M 39 16.5M 0 0 3005k 0 0:00:14 0:00:05 0:00:09 3316k
54 41.4M 54 22.4M 0 0 3465k 0 0:00:12 0:00:06 0:00:06 4229k
70 41.4M 70 29.2M 0 0 3925k 0 0:00:10 0:00:07 0:00:03 5150k
80 41.4M 80 33.4M 0 0 3957k 0 0:00:10 0:00:08 0:00:02 5326k
92 41.4M 92 38.4M 0 0 4076k 0 0:00:10 0:00:09 0:00:01 5498k
100 41.4M 100 41.4M 0 0 4170k 0 0:00:10 0:00:10 --:--:-- 5622k
install for i386
* installing *source* package 'sangeranalyseR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: wrong number of arguments to '=='
** help
*** installing help indices
converting help for package 'sangeranalyseR'
finding HTML links ... done
ChromatogramParam-class html
MakeBaseCalls-methods html
ObjectResults-class html
QualityReport-class-qualityBasePlot html
QualityReport-class-updateQualityParam
html
QualityReport-class html
SangerAlignment-class-generateReportSA
html
SangerAlignment-class-launchAppSA html
SangerAlignment-class-updateQualityParam
html
SangerAlignment-class-writeFastaSA html
SangerAlignment-class html
SangerAlignment html
SangerContig-class-generateReportSC html
SangerContig-class-launchAppSC html
SangerContig-class-readTable html
SangerContig-class-updateQualityParam html
SangerContig-class-writeFastaSC html
SangerContig-class html
SangerContig html
SangerRead-class-MakeBaseCalls html
SangerRead-class-generateReportSR html
SangerRead-class-qualityBasePlot html
SangerRead-class-readTable html
SangerRead-class-updateQualityParam html
SangerRead-class-writeFastaSR html
SangerRead-class html
SangerRead html
generateReport html
generateReportSA-methods html
generateReportSC-methods html
generateReportSR-methods html
launchApp html
launchAppSA-methods html
launchAppSC-methods html
qualityBasePlot-methods html
qualityReportData html
readTable-methods html
sangerAlignmentData html
sangerContigData html
sangerReadFData html
sangeranalyseR html
updateQualityParam-methods html
writeFasta html
writeFastaSA-methods html
writeFastaSC-methods html
writeFastaSR-methods html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sangeranalyseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sangeranalyseR' as sangeranalyseR_1.4.0.zip
* DONE (sangeranalyseR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'sangeranalyseR' successfully unpacked and MD5 sums checked