Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:34 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for XINA on tokay2


To the developers/maintainers of the XINA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/XINA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2073/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XINA 1.12.0  (landing page)
Lang Ho Lee
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/XINA
git_branch: RELEASE_3_14
git_last_commit: 232d72e
git_last_commit_date: 2021-10-26 12:46:35 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  TIMEOUT    OK    ERROR    ERROR  
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: XINA
Version: 1.12.0
Command: rm -rf XINA.buildbin-libdir && mkdir XINA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XINA.buildbin-libdir XINA_1.12.0.tar.gz
StartedAt: 2022-04-13 07:20:19 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 07:20:32 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 12.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf XINA.buildbin-libdir && mkdir XINA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=XINA.buildbin-libdir XINA_1.12.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'XINA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'XINA'
    finding HTML links ... done
    add_legend                              html  
    alluvial_enriched                       html  
    alluvial_enrichment_tests               html  
    calculate_centrality_scores             html  
    default_size                            html  
    draw_alluvial_plot                      html  
    example_clusters                        html  
    extract_data_column                     html  
    find_similar_clusters                   html  
    generate_count_table                    html  
    generate_superset                       html  
    get_color_for_nodes                     html  
    get_colors                              html  
    get_comigrations_by_name                html  
    get_condition_biased_comigrations       html  
    get_layout                              html  
    get_mTOR_proteins                       html  
    get_random_data                         html  
    get_stats                               html  
    get_theme_blank                         html  
    get_unknown_ppi_nodes                   html  
    gn                                      html  
    gn_desc                                 html  
    hprd_ppi                                html  
    length2                                 html  
    load_previous_results                   html  
    make_random_xina_data                   html  
    mutate_colors                           html  
    organize_clusters                       html  
    plot_NA                                 html  
    plot_clusters                           html  
    plot_clusters_all                       html  
    plot_condition_compositions             html  
    plot_enrichment_results                 html  
    rank_centrality                         html  
    string_example                          html  
    xina_analysis                           html  
    xina_clustering                         html  
    xina_enrichment                         html  
    xina_plot_all                           html  
    xina_plot_bycluster                     html  
    xina_plot_single                        html  
    xina_result_example                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
ERROR: loading failed
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/XINA.buildbin-libdir/XINA'