| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:55 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the twoddpcr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1979/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| twoddpcr 1.16.0 (landing page) Anthony Chiu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: twoddpcr |
| Version: 1.16.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings twoddpcr_1.16.0.tar.gz |
| StartedAt: 2021-10-14 11:58:23 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 12:00:35 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 132.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: twoddpcr.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings twoddpcr_1.16.0.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/twoddpcr.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘twoddpcr/DESCRIPTION’ ... OK
* this is package ‘twoddpcr’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘twoddpcr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ggplot.well 7.425 0.164 7.591
knnClassify 7.144 0.028 7.172
gridClassify 4.752 0.288 5.040
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(twoddpcr)
>
> test_check("twoddpcr")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 155 ]
>
> proc.time()
user system elapsed
5.839 0.248 6.073
twoddpcr.Rcheck/twoddpcr-Ex.timings
| name | user | system | elapsed | |
| amplitudes | 0.336 | 0.032 | 0.368 | |
| basicsSummary | 0.003 | 0.004 | 0.007 | |
| castSummary | 0.009 | 0.011 | 0.021 | |
| classCov | 0.060 | 0.005 | 0.064 | |
| classMeans | 0.055 | 0.000 | 0.055 | |
| classStats | 0.064 | 0.004 | 0.068 | |
| clusterCentres | 0.851 | 0.003 | 0.856 | |
| copiesSummary | 0.007 | 0.000 | 0.007 | |
| ddpcrPlate-class | 0.293 | 0.000 | 0.293 | |
| ddpcrWell-class | 0.024 | 0.000 | 0.024 | |
| ddpcrWell-methods | 0.285 | 0.000 | 0.285 | |
| dropletPlot | 4.291 | 0.068 | 4.359 | |
| exportTable | 0.130 | 0.006 | 0.136 | |
| extractPlateName | 0.001 | 0.000 | 0.000 | |
| extractWellNames | 0.000 | 0.000 | 0.001 | |
| facetPlot | 1.872 | 0.032 | 1.904 | |
| flatPlot | 4.454 | 0.076 | 4.532 | |
| fullCopiesSummary | 0.004 | 0.004 | 0.008 | |
| fullCountsSummary | 0.031 | 0.008 | 0.039 | |
| ggplot.well | 7.425 | 0.164 | 7.591 | |
| gridClassify | 4.752 | 0.288 | 5.040 | |
| heatPlot | 1.517 | 0.056 | 1.573 | |
| kmeansClassify | 1.014 | 0.036 | 1.050 | |
| knnClassify | 7.144 | 0.028 | 7.172 | |
| mahalanobisRain | 0.625 | 0.004 | 0.628 | |
| mutantCopiesSummary | 0.000 | 0.004 | 0.005 | |
| numDroplets | 0.270 | 0.003 | 0.272 | |
| parseClusterCounts | 0.005 | 0.008 | 0.013 | |
| plateClassification | 1.085 | 0.008 | 1.093 | |
| plateClassificationMethod | 0.392 | 0.000 | 0.391 | |
| plateSummary | 2.212 | 0.000 | 2.212 | |
| positiveCounts | 0.055 | 0.000 | 0.055 | |
| readCSVDataFrame | 0.012 | 0.000 | 0.013 | |
| relabelClasses | 0.043 | 0.000 | 0.043 | |
| removeDropletClasses | 0.626 | 0.000 | 0.626 | |
| renormalisePlate | 3.437 | 0.000 | 3.438 | |
| sdRain | 3.233 | 0.007 | 3.241 | |
| setChannelNames | 0.001 | 0.000 | 0.002 | |
| setDropletVolume | 0.000 | 0.000 | 0.001 | |
| sortDataFrame | 0.000 | 0.002 | 0.003 | |
| sortWells | 0.275 | 0.001 | 0.276 | |
| thresholdClassify | 1.836 | 0.008 | 1.843 | |
| wellClassification | 0.014 | 0.004 | 0.017 | |
| wellClassificationMethod | 0.02 | 0.00 | 0.02 | |
| whiteTheme | 1.354 | 0.012 | 1.367 | |
| wildTypeCopiesSummary | 0.005 | 0.000 | 0.005 | |