| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:42 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the granulator package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/granulator.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 803/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| granulator 1.0.0 (landing page) Sabina Pfister
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: granulator |
| Version: 1.0.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:granulator.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings granulator_1.0.0.tar.gz |
| StartedAt: 2021-10-14 10:05:02 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:12:09 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 427.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: granulator.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:granulator.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings granulator_1.0.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/granulator.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘granulator/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘granulator’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘granulator’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
deconvolute 62.795 0.020 65.655
plot_correlate 45.460 0.012 48.179
plot_deconvolute 36.602 0.020 38.470
plot_benchmark 36.415 0.000 38.073
plot_regress 33.371 0.012 33.385
plot_proportions 32.129 0.016 32.146
benchmark 30.567 0.092 30.661
correlate 30.561 0.019 30.581
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
granulator.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL granulator ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘granulator’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (granulator)
granulator.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> library("granulator")
>
> test_check("granulator")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 137 ]
>
> proc.time()
user system elapsed
52.355 0.721 53.148
granulator.Rcheck/granulator-Ex.timings
| name | user | system | elapsed | |
| benchmark | 30.567 | 0.092 | 30.661 | |
| correlate | 30.561 | 0.019 | 30.581 | |
| deconvolute | 62.795 | 0.020 | 65.655 | |
| get_TPM | 0.001 | 0.000 | 0.001 | |
| get_decon_methods | 0.000 | 0.000 | 0.001 | |
| load_ABIS | 0.000 | 0.011 | 0.013 | |
| plot_benchmark | 36.415 | 0.000 | 38.073 | |
| plot_correlate | 45.460 | 0.012 | 48.179 | |
| plot_deconvolute | 36.602 | 0.020 | 38.470 | |
| plot_proportions | 32.129 | 0.016 | 32.146 | |
| plot_regress | 33.371 | 0.012 | 33.385 | |
| plot_similarity | 4.661 | 0.004 | 4.665 | |