Christian Arnold
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/SNPhood |
| git_branch: RELEASE_3_13 |
| git_last_commit: 562991f |
| git_last_commit_date: 2021-05-19 12:16:25 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:23 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the SNPhood package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPhood.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1801/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPhood 1.22.0 (landing page) Christian Arnold
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SNPhood |
| Version: 1.22.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SNPhood_1.22.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.22.0.zip && rm SNPhood_1.22.0.tar.gz SNPhood_1.22.0.zip |
| StartedAt: 2021-10-14 10:21:25 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:23:01 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 95.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/SNPhood_1.22.0.tar.gz && rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL SNPhood_1.22.0.zip && rm SNPhood_1.22.0.tar.gz SNPhood_1.22.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
28 3965k 28 1119k 0 0 2297k 0 0:00:01 --:--:-- 0:00:01 2297k
100 3965k 100 3965k 0 0 3544k 0 0:00:01 0:00:01 --:--:-- 3546k
install for i386
* installing *source* package 'SNPhood' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SNPhood'
finding HTML links ... done
SNPhood-class html
SNPhood html
SNPhood.o html
analyzeSNPhood html
finding level-2 HTML links ... done
annotation-methods html
annotationBins html
annotationBins2 html
annotationDatasets html
annotationReadGroups html
annotationRegions html
associateGenotypes html
bins-methods html
changeObjectIntegrityChecking html
collectFiles html
convertToAllelicFractions html
counts-method html
datasets-methods html
deleteDatasets html
deleteReadGroups html
deleteRegions html
enrichment-methods html
getDefaultParameterList html
mergeReadGroups html
parameters-methods html
plotAllelicBiasResults html
plotAllelicBiasResultsOverview html
plotAndCalculateCorrelationDatasets html
plotAndCalculateWeakAndStrongGenotype html
plotAndClusterMatrix html
plotAndSummarizeAllelicBiasTest html
plotBinCounts html
plotClusterAverage html
plotFDRResults html
plotGenotypesPerCluster html
plotGenotypesPerSNP html
plotRegionCounts html
readGroups-methods html
regions-methods html
renameBins html
renameDatasets html
renameReadGroups html
renameRegions html
results html
testForAllelicBiases html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SNPhood' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SNPhood' as SNPhood_1.22.0.zip
* DONE (SNPhood)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'SNPhood' successfully unpacked and MD5 sums checked