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This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for GeneAccord on tokay2

To the developers/maintainers of the GeneAccord package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneAccord.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 707/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneAccord 1.10.0  (landing page)
Ariane L. Moore
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/GeneAccord
git_branch: RELEASE_3_13
git_last_commit: cfc8768
git_last_commit_date: 2021-05-19 12:37:11 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: GeneAccord
Version: 1.10.0
Command: rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.10.0.tar.gz
StartedAt: 2021-10-15 09:28:15 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 09:29:30 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 75.1 seconds
RetCode: 0
Status:   OK  
PackageFile: GeneAccord_1.10.0.zip
PackageFileSize: 3.813 MiB

Command output

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###
### Running command:
###
###   rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.10.0.tar.gz
###
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install for i386

* installing *source* package 'GeneAccord' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'GeneAccord'
    finding HTML links ... done
    GeneAccord                              html  
    all_genes_tbl                           html  
    avg_rates_m                             html  
    build_null_test_statistic               html  
    clone_tbl_all_pats_all_trees            html  
    compute_rates_clon_excl                 html  
    compute_test_stat_avg_rate              html  
    convert_ensembl_to_reactome_pw_tbl      html  
    create_ensembl_gene_tbl_hg              html  
    create_tbl_ent_clones                   html  
    create_tbl_tree_collection              html  
    ecdf_list                               html  
    ecdf_lr_test_clon_excl_avg_rate         html  
    ensembl_to_hgnc                         html  
    ensembl_to_reactome                     html  
    ensg_reactome_path_map                  html  
    ensmusg_reactome_path_map               html  
    extract_num_clones_tbl                  html  
    generate_ecdf_test_stat                 html  
    generate_test_stat_hist                 html  
    get_hist_clon_excl                      html  
    get_hist_clon_excl_this_pat_this_pair   html  
    get_rate_diff_branch_ent_pair           html  
    heatmap_clones_gene_pat                 html  
    hgnc_to_ensembl                         html  
    is_diff_branch_ent_pair                 html  
    list_of_clon_excl_all_pats              html  
    list_of_num_trees_all_pats              html  
    map_pairs_to_hgnc_symbols               html  
    merge_clones_identical_ents             html  
    pairs_in_patients_hist                  html  
    plot_ecdf_test_stat                     html  
    plot_rates_clon_excl                    html  
    take_pairs_and_get_patients             html  
    vis_pval_distr_num_pat                  html  
    write_res_pairs_to_disk                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'GeneAccord' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneAccord' as GeneAccord_1.10.0.zip
* DONE (GeneAccord)