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###
### Running command:
###
###   rm -rf scater.buildbin-libdir && mkdir scater.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scater.buildbin-libdir scater_1.18.6.tar.gz
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install for i386

* installing *source* package 'scater' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'scater'
    finding HTML links ... done
    SCESet                                  html  
    accessors                               html  
    finding level-2 HTML links ... done

    annotateBMFeatures                      html  
    batchCorrectedAverages                  html  
    bootstraps                              html  
    defunct                                 html  
    getExplanatoryPCs                       html  
    getVarianceExplained                    html  
    ggsce                                   html  
    multiplot                               html  
    nexprs                                  html  
    plotColData                             html  
    plotDots                                html  
    plotExplanatoryPCs                      html  
    plotExplanatoryVariables                html  
    plotExpression                          html  
    plotGroupedHeatmap                      html  
    plotHeatmap                             html  
    plotHighestExprs                        html  
    plotPlatePosition                       html  
    plotRLE                                 html  
    plotReducedDim                          html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/plotReducedDim.Rd:34: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic
    plotRowData                             html  
    plotScater                              html  
    plot_reddim                             html  
    reexports                               html  
    retrieveCellInfo                        html  
    retrieveFeatureInfo                     html  
    runColDataPCA                           html  
    runDiffusionMap                         html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runDiffusionMap.Rd:42: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runDiffusionMap.Rd:77: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runDiffusionMap.Rd:78: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runDiffusionMap.Rd:147: file link 'DiffusionMap' in package 'destiny' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runDiffusionMap.Rd:149: file link 'plotDiffusionMap' in package 'scater' does not exist and so has been treated as a topic
    runMDS                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runMDS.Rd:143: file link 'plotMDS' in package 'scater' does not exist and so has been treated as a topic
    runMultiUMAP                            html  
    runNMF                                  html  
    runPCA                                  html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runPCA.Rd:159: file link 'plotPCA' in package 'scater' does not exist and so has been treated as a topic
    runTSNE                                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/Rtmp8oJU9w/R.INSTALL2c0c5eb97b22/scater/man/runTSNE.Rd:114: file link 'Rtsne_neighbors' in package 'Rtsne' does not exist and so has been treated as a topic
    runUMAP                                 html  
    scater-pkg                              html  
    scater-plot-args                        html  
    toSingleCellExperiment                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'scater' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scater' as scater_1.18.6.zip
* DONE (scater)