| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:36:33 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the ropls package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1568/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ropls 1.22.0 (landing page) Etienne A. Thevenot
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: ropls |
| Version: 1.22.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.22.0.tar.gz |
| StartedAt: 2021-05-06 05:39:50 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 05:41:19 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 89.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ropls.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.22.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.12-bioc/meat/ropls.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ropls/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ropls’ version ‘1.22.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ropls’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘MultiDataSet’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
getMset 6.719 0.213 6.948
opls 4.831 0.156 5.001
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.12-bioc/meat/ropls.Rcheck/00check.log’
for details.
ropls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ropls ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.0/Resources/library’ * installing *source* package ‘ropls’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading in method for ‘opls’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet” ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ropls)
ropls.Rcheck/ropls-Ex.timings
| name | user | system | elapsed | |
| checkW4M | 0.188 | 0.017 | 0.205 | |
| coef | 0.833 | 0.111 | 0.946 | |
| fitted | 1.340 | 0.059 | 1.403 | |
| fromW4M | 0.141 | 0.004 | 0.146 | |
| getEset | 0.692 | 0.060 | 0.759 | |
| getLoadingMN | 0.679 | 0.056 | 0.738 | |
| getMset | 6.719 | 0.213 | 6.948 | |
| getPcaVarVn | 0.122 | 0.007 | 0.130 | |
| getScoreMN | 0.756 | 0.045 | 0.802 | |
| getSubsetVi | 0.082 | 0.006 | 0.098 | |
| getSummaryDF | 0.714 | 0.026 | 0.742 | |
| getVipVn | 0.736 | 0.036 | 0.774 | |
| getWeightMN | 1.163 | 0.042 | 1.209 | |
| opls-class | 2.367 | 0.107 | 2.502 | |
| opls | 4.831 | 0.156 | 5.001 | |
| oplsMultiDataSet-class | 0 | 0 | 0 | |
| plot | 4.310 | 0.109 | 4.440 | |
| predict | 0.082 | 0.008 | 0.090 | |
| 0.805 | 0.037 | 0.880 | ||
| residuals | 0.443 | 0.012 | 0.456 | |
| ropls-package | 3.025 | 0.094 | 3.126 | |
| show | 0.755 | 0.026 | 0.784 | |
| tested | 0.080 | 0.004 | 0.084 | |
| toW4M | 0.153 | 0.005 | 0.158 | |
| view | 0.632 | 0.075 | 0.712 | |