Simon Dirmeier
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/netReg |
| Branch: RELEASE_3_12 |
| Last Commit: 3863166 |
| Last Changed Date: 2020-10-27 11:22:43 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:28 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the netReg package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1220/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Simon Dirmeier
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: netReg |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/netReg_1.14.0.tar.gz && rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netReg.buildbin-libdir netReg_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL netReg_1.14.0.zip && rm netReg_1.14.0.tar.gz netReg_1.14.0.zip |
| StartedAt: 2021-05-05 17:12:03 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 17:27:39 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 936.3 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/netReg_1.14.0.tar.gz && rm -rf netReg.buildbin-libdir && mkdir netReg.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netReg.buildbin-libdir netReg_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL netReg_1.14.0.zip && rm netReg_1.14.0.tar.gz netReg_1.14.0.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
restoring symbolic link as a file copy
* installing *source* package 'netReg' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c graph_utility.cpp -o graph_utility.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stat_functions.cpp -o stat_functions.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o netReg.dll tmp.def RcppExports.o graph_utility.o stat_functions.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/netReg.buildbin-libdir/00LOCK-netReg/00new/netReg/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'netReg'
finding HTML links ... done
cvedgenet-methods html
edgenet-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUtzTzV/R.INSTALL1734383f6043/netReg/man/edgenet-methods.Rd:96: file link 'family' in package 'netReg' does not exist and so has been treated as a topic
family-methods html
grouplasso-methods html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpUtzTzV/R.INSTALL1734383f6043/netReg/man/grouplasso-methods.Rd:75: file link 'family' in package 'netReg' does not exist and so has been treated as a topic
netReg-package html
yeast html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
Could not find tensorflow installation
Warning in fun(libname, pkgname) :
Could not find tensorflow-probability installation
Warning: Package 'netReg' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
Could not find tensorflow installation
Warning in fun(libname, pkgname) :
Could not find tensorflow-probability installation
Warning: Package 'netReg' is deprecated and will be removed from Bioconductor
version 3.13
** testing if installed package keeps a record of temporary installation path
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
restoring symbolic link as a file copy
* installing *source* package 'netReg' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c graph_utility.cpp -o graph_utility.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stat_functions.cpp -o stat_functions.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o netReg.dll tmp.def RcppExports.o graph_utility.o stat_functions.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/netReg.buildbin-libdir/netReg/libs/x64
** testing if installed package can be loaded
Warning: Package 'netReg' is deprecated and will be removed from Bioconductor
version 3.13
* MD5 sums
packaged installation of 'netReg' as netReg_1.14.0.zip
* DONE (netReg)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'netReg' successfully unpacked and MD5 sums checked