Back to Multiple platform build/check report for BioC 3.12
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

BUILD BIN report for biomformat on tokay1

This page was generated on 2021-05-06 12:30:03 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the biomformat package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 178/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biomformat 1.18.0  (landing page)
Paul J. McMurdie
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/biomformat
Branch: RELEASE_3_12
Last Commit: dc18859
Last Changed Date: 2020-10-27 11:09:49 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository

Summary

Package: biomformat
Version: 1.18.0
Command: rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.18.0.tar.gz
StartedAt: 2021-05-06 08:33:43 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 08:34:32 -0400 (Thu, 06 May 2021)
EllapsedTime: 48.4 seconds
RetCode: 0
Status:   OK   
PackageFile: biomformat_1.18.0.zip
PackageFileSize: 481.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf biomformat.buildbin-libdir && mkdir biomformat.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biomformat.buildbin-libdir biomformat_1.18.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'biomformat' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for 'nrow' from package 'base' in package 'biomformat'
Creating a generic function for 'ncol' from package 'base' in package 'biomformat'
Creating a generic function for 'rownames' from package 'base' in package 'biomformat'
Creating a generic function for 'colnames' from package 'base' in package 'biomformat'
** help
*** installing help indices
  converting help for package 'biomformat'
    finding HTML links ... done
    biom-class                              html  
    biom-methods                            html  
    finding level-2 HTML links ... done

    biom-package                            html  
    biom_data-methods                       html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/biom_data-methods.Rd:46: missing link 'plyr-package'
    biom_shape-methods                      html  
    colnames-methods                        html  
    header-methods                          html  
    make_biom                               html  
    matrix_element_type-methods             html  
    ncol-methods                            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/ncol-methods.Rd:6: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/ncol-methods.Rd:19: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/ncol-methods.Rd:31: file link 'ncol' in package 'base' does not exist and so has been treated as a topic
    nrow-methods                            html  
    observation_metadata-methods            html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/observation_metadata-methods.Rd:30: missing link 'plyr-package'
    read_biom                               html  
    read_hdf5_biom                          html  
    rownames-methods                        html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/rownames-methods.Rd:6: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/rownames-methods.Rd:19: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/rownames-methods.Rd:31: file link 'rownames' in package 'base' does not exist and so has been treated as a topic
    sample_metadata-methods                 html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpQFPUk7/R.INSTALL44e0780b16dc/biomformat/man/sample_metadata-methods.Rd:30: missing link 'plyr-package'
    show-methods                            html  
    write_biom                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'biomformat' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biomformat' as biomformat_1.18.0.zip
* DONE (biomformat)