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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:bigPint.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings bigPint_1.6.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/bigPint.Rcheck'
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bigPint/DESCRIPTION' ... OK
* this is package 'bigPint' version '1.6.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bigPint' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 22.6Mb
  sub-directories of 1Mb or more:
    data              11.0Mb
    help               3.2Mb
    shiny-dashboards   5.0Mb
    shiny-examples     3.1Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
plotSM       48.33   0.34   76.14
plotClusters 23.89   1.13   25.01
plotLitre     4.56   1.23    6.10
plotVolcano   1.32   0.06    5.55
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
              user system elapsed
plotSM       46.66   0.33   59.61
plotClusters 14.95   0.64   15.59
plotPCP       1.60   0.08    5.33
plotVolcano   1.30   0.02    6.65
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.12-bioc/meat/bigPint.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/bigPint_1.6.0.tar.gz && rm -rf bigPint.buildbin-libdir && mkdir bigPint.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bigPint.buildbin-libdir bigPint_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL bigPint_1.6.0.zip && rm bigPint_1.6.0.tar.gz bigPint_1.6.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 56.8M  100 56.8M    0     0  72.6M      0 --:--:-- --:--:-- --:--:-- 72.7M

install for i386

* installing *source* package 'bigPint' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bigPint'
    finding HTML links ... done
    bigPint                                 html  
    convertSEPair                           html  
    convertSESubsetGenes                    html  
    plotClusters                            html  
    plotLitre                               html  
    plotLitreApp                            html  
    plotPCP                                 html  
    plotPCPApp                              html  
    plotSM                                  html  
    plotSMApp                               html  
    plotVolcano                             html  
    plotVolcanoApp                          html  
    se_soybean_cn_sub                       html  
    se_soybean_ir_sub                       html  
    soybean_cn                              html  
    soybean_cn_metrics                      html  
    soybean_cn_sub                          html  
    soybean_cn_sub_metrics                  html  
    soybean_ir                              html  
    soybean_ir_metrics                      html  
    soybean_ir_sub                          html  
    soybean_ir_sub_metrics                  html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bigPint' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bigPint' as bigPint_1.6.0.zip
* DONE (bigPint)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'bigPint' successfully unpacked and MD5 sums checked