Jiefei Wang
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/SharedObject |
| Branch: RELEASE_3_12 |
| Last Commit: ceb0939 |
| Last Changed Date: 2020-10-30 07:34:26 -0400 (Fri, 30 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:36 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the SharedObject package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1694/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SharedObject 1.4.0 (landing page) Jiefei Wang
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SharedObject |
| Version: 1.4.0 |
| Command: rm -rf SharedObject.buildbin-libdir && mkdir SharedObject.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SharedObject.buildbin-libdir SharedObject_1.4.0.tar.gz |
| StartedAt: 2021-05-06 10:06:47 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 10:08:13 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 86.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SharedObject_1.4.0.zip |
| PackageFileSize: 1.435 MiB |
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### Running command:
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### rm -rf SharedObject.buildbin-libdir && mkdir SharedObject.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SharedObject.buildbin-libdir SharedObject_1.4.0.tar.gz
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install for i386
* installing *source* package 'SharedObject' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
rm -f "../inst/include/SharedObject/sharedMemory.h" &&\
rm -f "../inst/usrlib/i386/SharedObject.a" &&\
mkdir -p ../inst/include&&\
mkdir -p ../inst/include/SharedObject&&\
mkdir -p ../inst/usrlib/i386
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_interface.cpp -o C_interface.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrepRegistration.cpp -o altrepRegistration.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sharedMemory.cpp -o sharedMemory.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:24,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/detail/shared_dir_helpers.hpp:30,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/shared_memory_object.hpp:30,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/sync/shm/named_semaphore.hpp:29,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/sync/named_semaphore.hpp:37,
from sharedMemory.cpp:4:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'boost::interprocess::ipcdetail::ref_count_ptr* boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::find(const char*)':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp:405:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ return this->members_.plong_repr()->start; }
^~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'bool boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::erase(const char*)':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp:405:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ return this->members_.plong_repr()->start; }
^~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'boost::interprocess::ipcdetail::ref_count_ptr* boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::insert(const char*, const boost::interprocess::ipcdetail::ref_count_ptr&)':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp:405:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ return this->members_.plong_repr()->start; }
^~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tools.cpp -o tools.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o SharedObject.dll tmp.def C_interface.o RcppExports.o altrepRegistration.o sharedMemory.o tools.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/i386 -lR
"C:/rtools40/mingw32/bin/"ar -crv SharedObject.a *.o
a - C_interface.o
a - RcppExports.o
a - altrepRegistration.o
a - sharedMemory.o
a - tools.o
cp "sharedMemory.h" "../inst/include/SharedObject/"&&\
cp "SharedObject.a" "../inst/usrlib/i386/"
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/SharedObject.buildbin-libdir/00LOCK-SharedObject/00new/SharedObject/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SharedObject'
finding HTML links ... done
developer-API html
is.altrep html
is.shared html
listSharedObject html
pkgconfig html
share html
sharedObjectOptions html
sharedObjectProperty html
unshare html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SharedObject' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
rm -f "../inst/include/SharedObject/sharedMemory.h" &&\
rm -f "../inst/usrlib/x64/SharedObject.a" &&\
mkdir -p ../inst/include&&\
mkdir -p ../inst/include/SharedObject&&\
mkdir -p ../inst/usrlib/x64
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c C_interface.cpp -o C_interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c altrepRegistration.cpp -o altrepRegistration.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sharedMemory.cpp -o sharedMemory.o
In file included from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:24,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/detail/shared_dir_helpers.hpp:30,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/shared_memory_object.hpp:30,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/sync/shm/named_semaphore.hpp:29,
from C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/interprocess/sync/named_semaphore.hpp:37,
from sharedMemory.cpp:4:
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'boost::interprocess::ipcdetail::ref_count_ptr* boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::find(const char*)':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp:405:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ return this->members_.plong_repr()->start; }
^~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'bool boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::erase(const char*)':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp:405:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ return this->members_.plong_repr()->start; }
^~~~~
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'boost::interprocess::ipcdetail::ref_count_ptr* boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::insert(const char*, const boost::interprocess::ipcdetail::ref_count_ptr&)':
C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include/boost/container/string.hpp:405:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
{ return this->members_.plong_repr()->start; }
^~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.12-/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.12-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tools.cpp -o tools.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o SharedObject.dll tmp.def C_interface.o RcppExports.o altrepRegistration.o sharedMemory.o tools.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.12-/R/bin/x64 -lR
"C:/rtools40/mingw64/bin/"ar -crv SharedObject.a *.o
a - C_interface.o
a - RcppExports.o
a - altrepRegistration.o
a - sharedMemory.o
a - tools.o
cp "sharedMemory.h" "../inst/include/SharedObject/"&&\
cp "SharedObject.a" "../inst/usrlib/x64/"
installing to C:/Users/biocbuild/bbs-3.12-bioc/meat/SharedObject.buildbin-libdir/SharedObject/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SharedObject' as SharedObject_1.4.0.zip
* DONE (SharedObject)