| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:29:00 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the Scale4C package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1624/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Scale4C 1.12.0 (landing page) Carolin Walter
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: Scale4C |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:Scale4C.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings Scale4C_1.12.0.tar.gz |
| StartedAt: 2021-05-06 05:39:43 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 05:43:12 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 208.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Scale4C.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:Scale4C.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings Scale4C_1.12.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/Scale4C.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Scale4C/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Scale4C’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Scale4C’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
findSingularities 17.680 0.048 17.751
outputScaleSpaceTree 5.728 0.000 5.735
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Scale4C.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL Scale4C ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘Scale4C’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Scale4C)
Scale4C.Rcheck/Scale4C-Ex.timings
| name | user | system | elapsed | |
| Scale4C-class | 0.004 | 0.000 | 0.002 | |
| Scale4C | 0.336 | 0.048 | 0.463 | |
| addPointsOfInterest | 0.404 | 0.024 | 0.437 | |
| calculateFingerprintMap | 0.116 | 0.000 | 0.115 | |
| calculateScaleSpace | 0.080 | 0.004 | 0.084 | |
| findSingularities | 17.680 | 0.048 | 17.751 | |
| importBasic4CseqData | 0.116 | 0.000 | 0.117 | |
| liverData | 0.008 | 0.000 | 0.007 | |
| liverDataVP | 0.008 | 0.000 | 0.008 | |
| outputScaleSpaceTree | 5.728 | 0.000 | 5.735 | |
| plotInflectionPoints | 0.024 | 0.004 | 0.030 | |
| plotTesselation | 0 | 0 | 0 | |
| plotTraceback | 0.004 | 0.000 | 0.001 | |