Marcin Kosinski
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/RTCGA |
| Branch: RELEASE_3_12 |
| Last Commit: a59c025 |
| Last Changed Date: 2020-10-27 11:07:57 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:33:22 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the RTCGA package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1591/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RTCGA 1.20.0 (landing page) Marcin Kosinski
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: RTCGA |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/RTCGA_1.20.0.tar.gz && rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.20.0.zip && rm RTCGA_1.20.0.tar.gz RTCGA_1.20.0.zip |
| StartedAt: 2021-05-05 19:09:10 -0400 (Wed, 05 May 2021) |
| EndedAt: 2021-05-05 19:09:55 -0400 (Wed, 05 May 2021) |
| EllapsedTime: 45.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/RTCGA_1.20.0.tar.gz && rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL RTCGA_1.20.0.zip && rm RTCGA_1.20.0.tar.gz RTCGA_1.20.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2440k 100 2440k 0 0 24.3M 0 --:--:-- --:--:-- --:--:-- 24.5M
install for i386
* installing *source* package 'RTCGA' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'RTCGA'
finding HTML links ... done
RTCGA-package html
boxplotTCGA html
finding level-2 HTML links ... done
checkTCGA html
convertTCGA html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/convertTCGA.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/convertTCGA.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/convertTCGA.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/convertTCGA.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/convertTCGA.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/convertTCGA.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
datasetsTCGA html
downloadTCGA html
expressionsTCGA html
heatmapTCGA html
infoTCGA html
installTCGA html
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpGQwp4V/R.INSTALL2b8c16ba24ed/RTCGA/man/installTCGA.Rd:16: file link 'install_github' in package 'devtools' does not exist and so has been treated as a topic
kmTCGA html
mutationsTCGA html
pcaTCGA html
readTCGA html
survivalTCGA html
theme_RTCGA html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'RTCGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA' as RTCGA_1.20.0.zip
* DONE (RTCGA)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'RTCGA' successfully unpacked and MD5 sums checked