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BUILD BIN report for RTCGA on tokay1

This page was generated on 2021-05-06 12:33:22 -0400 (Thu, 06 May 2021).

To the developers/maintainers of the RTCGA package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1591/1974HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RTCGA 1.20.0  (landing page)
Marcin Kosinski
Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021)
URL: https://git.bioconductor.org/packages/RTCGA
Branch: RELEASE_3_12
Last Commit: a59c025
Last Changed Date: 2020-10-27 11:07:57 -0400 (Tue, 27 Oct 2020)
malbec1Linux (Ubuntu 18.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version exists in internal repository
tokay1Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version exists in internal repository
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version exists in internal repository

Summary

Package: RTCGA
Version: 1.20.0
Command: rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.20.0.tar.gz
StartedAt: 2021-05-06 10:00:50 -0400 (Thu, 06 May 2021)
EndedAt: 2021-05-06 10:01:15 -0400 (Thu, 06 May 2021)
EllapsedTime: 25.2 seconds
RetCode: 0
Status:   OK   
PackageFile: RTCGA_1.20.0.zip
PackageFileSize: 515.3 KiB

Command output

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###
### Running command:
###
###   rm -rf RTCGA.buildbin-libdir && mkdir RTCGA.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=RTCGA.buildbin-libdir RTCGA_1.20.0.tar.gz
###
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install for i386

* installing *source* package 'RTCGA' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'RTCGA'
    finding HTML links ... done
    RTCGA-package                           html  
    boxplotTCGA                             html  
    finding level-2 HTML links ... done

    checkTCGA                               html  
    convertTCGA                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/convertTCGA.Rd:23: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/convertTCGA.Rd:23: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/convertTCGA.Rd:13: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/convertTCGA.Rd:13: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/convertTCGA.Rd:18: file link 'ExpressionSet' in package 'Biobase' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/convertTCGA.Rd:18: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
    datasetsTCGA                            html  
    downloadTCGA                            html  
    expressionsTCGA                         html  
    heatmapTCGA                             html  
    infoTCGA                                html  
    installTCGA                             html  
Rd warning: C:/Users/biocbuild/bbs-3.12-bioc/tmpdir/RtmpwXAhw4/R.INSTALL12c436ec3d8b/RTCGA/man/installTCGA.Rd:16: file link 'install_github' in package 'devtools' does not exist and so has been treated as a topic
    kmTCGA                                  html  
    mutationsTCGA                           html  
    pcaTCGA                                 html  
    readTCGA                                html  
    survivalTCGA                            html  
    theme_RTCGA                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'RTCGA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RTCGA' as RTCGA_1.20.0.zip
* DONE (RTCGA)