| Back to Multiple platform build/check report for BioC 3.12 |
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This page was generated on 2021-05-06 12:28:25 -0400 (Thu, 06 May 2021).
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To the developers/maintainers of the NormqPCR package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1233/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NormqPCR 1.36.0 (landing page) James Perkins
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: NormqPCR |
| Version: 1.36.0 |
| Command: /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings NormqPCR_1.36.0.tar.gz |
| StartedAt: 2021-05-06 04:04:04 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:06:04 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 119.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: NormqPCR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD check --install=check:NormqPCR.install-out.txt --library=/home/biocbuild/bbs-3.12-bioc/R/library --no-vignettes --timings NormqPCR_1.36.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck’
* using R version 4.0.5 (2021-03-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘NormqPCR/DESCRIPTION’ ... OK
* this is package ‘NormqPCR’ version ‘1.36.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NormqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CqValues,CyclesSet: no visible binding for global variable ‘l5’
Undefined global functions or variables:
l5
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
CqValues 46.3 0.08 46.502
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.12-bioc/meat/NormqPCR.Rcheck/00check.log’
for details.
NormqPCR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.12-bioc/R/bin/R CMD INSTALL NormqPCR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.12-bioc/R/library’ * installing *source* package ‘NormqPCR’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘NormqPCR.Rnw’ ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NormqPCR)
NormqPCR.Rcheck/NormqPCR-Ex.timings
| name | user | system | elapsed | |
| Bladder | 0.016 | 0.000 | 0.015 | |
| BladderRepro | 0.000 | 0.004 | 0.005 | |
| Colon | 0.008 | 0.000 | 0.007 | |
| ComputeNRQs | 0.192 | 0.008 | 0.260 | |
| CqValues | 46.300 | 0.080 | 46.502 | |
| NormqPCR-package | 0.000 | 0.000 | 0.001 | |
| combineTechReps | 0.064 | 0.004 | 0.084 | |
| combineTechRepsSD | 0.12 | 0.00 | 0.12 | |
| deltaCt | 0.136 | 0.000 | 0.152 | |
| deltaDeltaCt | 0.176 | 0.000 | 0.175 | |
| geNorm | 0.004 | 0.004 | 0.008 | |
| geomMean | 0.004 | 0.000 | 0.000 | |
| makeAllNAs | 0.080 | 0.004 | 0.086 | |
| makeAllNewVal | 0.084 | 0.000 | 0.082 | |
| replaceAboveCutOff | 0.116 | 0.000 | 0.118 | |
| replaceNAs | 0.152 | 0.000 | 0.152 | |
| selectHKs | 0.048 | 0.000 | 0.045 | |
| stabMeasureM | 0.200 | 0.004 | 0.207 | |
| stabMeasureRho | 0.132 | 0.000 | 0.130 | |