Andrea Rodriguez-Martinez
| Snapshot Date: 2021-05-05 14:51:38 -0400 (Wed, 05 May 2021) |
| URL: https://git.bioconductor.org/packages/MetaboSignal |
| Branch: RELEASE_3_12 |
| Last Commit: 5554397 |
| Last Changed Date: 2020-10-27 11:17:25 -0400 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.12 |
|
This page was generated on 2021-05-06 12:32:11 -0400 (Thu, 06 May 2021).
|
To the developers/maintainers of the MetaboSignal package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1048/1974 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MetaboSignal 1.20.0 (landing page) Andrea Rodriguez-Martinez
| malbec1 | Linux (Ubuntu 18.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MetaboSignal |
| Version: 1.20.0 |
| Command: C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaboSignal.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MetaboSignal_1.20.0.tar.gz |
| StartedAt: 2021-05-06 04:25:20 -0400 (Thu, 06 May 2021) |
| EndedAt: 2021-05-06 04:34:54 -0400 (Thu, 06 May 2021) |
| EllapsedTime: 574.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MetaboSignal.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:MetaboSignal.install-out.txt --library=C:\Users\biocbuild\bbs-3.12-bioc\R\library --no-vignettes --timings MetaboSignal_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.12-bioc/meat/MetaboSignal.Rcheck' * using R version 4.0.5 (2021-03-31) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MetaboSignal/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MetaboSignal' version '1.20.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MetaboSignal' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE MS_tissueFilter: no visible binding for global variable 'hpaNormalTissue' get_molecule_type: no visible binding for global variable 'regulatory_interactions' Undefined global functions or variables: hpaNormalTissue regulatory_interactions * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.12-bioc/meat/MetaboSignal.Rcheck/00check.log' for details.
MetaboSignal.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.3/BBS/3.12/bioc/src/contrib/MetaboSignal_1.20.0.tar.gz && rm -rf MetaboSignal.buildbin-libdir && mkdir MetaboSignal.buildbin-libdir && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MetaboSignal.buildbin-libdir MetaboSignal_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.12-bioc\R\bin\R.exe CMD INSTALL MetaboSignal_1.20.0.zip && rm MetaboSignal_1.20.0.tar.gz MetaboSignal_1.20.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2632k 100 2632k 0 0 18.8M 0 --:--:-- --:--:-- --:--:-- 19.0M
install for i386
* installing *source* package 'MetaboSignal' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'MetaboSignal'
finding HTML links ... done
MS2_mergeNetworks html
MS2_ppiNetwork html
MS_changeNames html
MS_convertGene html
MS_distances html
MS_exportCytoscape html
MS_findMappedNodes html
MS_getPathIds html
MS_keggFinder html
MS_keggNetwork html
MS_nodeBW html
MS_reactionNetwork html
MS_removeDrugs html
MS_removeNode html
MS_replaceNode html
MS_shortestPaths html
MS_shortestPathsNetwork html
MS_tissueFilter html
MS_topologyFilter html
MetaboSignal_table html
directionality_reactions html
hpaNormalTissue html
keggNet_example html
kegg_pathways html
mergedNet_example html
ppiNet_example html
regulatory_interactions html
** building package indices
** installing vignettes
'MetaboSignal.Rmd' using 'UTF-8'
'MetaboSignal2.Rmd' using 'UTF-8'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'MetaboSignal' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MetaboSignal' as MetaboSignal_1.20.0.zip
* DONE (MetaboSignal)
* installing to library 'C:/Users/biocbuild/bbs-3.12-bioc/R/library'
package 'MetaboSignal' successfully unpacked and MD5 sums checked
|
MetaboSignal.Rcheck/tests_i386/runTests.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("MetaboSignal")
Note: some source_nodes or target_nodes were not mapped onto the network
Calculating distances
Building shortest path network
Note that all source_nodes and target_nodes were successfully mapped onto the network
Calculating distances
Building shortest path network
Note that all source_nodes and target_nodes were successfully mapped onto the network
Calculating distances
Building shortest path network
Note that all source_nodes and target_nodes were successfully mapped onto the network
Network features:
Number of nodes:59
Number of edges:100
Network features:
Number of nodes:59
Number of edges:100
RUNIT TEST PROTOCOL -- Thu May 06 04:34:28 2021
***********************************************
Number of test functions: 9
Number of errors: 0
Number of failures: 0
1 Test Suite :
MetaboSignal RUnit Tests - 9 test functions, 0 errors, 0 failures
Number of test functions: 9
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
13.12 1.18 16.31
|
MetaboSignal.Rcheck/tests_x64/runTests.Rout
R version 4.0.5 (2021-03-31) -- "Shake and Throw"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("MetaboSignal")
Note: some source_nodes or target_nodes were not mapped onto the network
Calculating distances
Building shortest path network
Note that all source_nodes and target_nodes were successfully mapped onto the network
Calculating distances
Building shortest path network
Note that all source_nodes and target_nodes were successfully mapped onto the network
Calculating distances
Building shortest path network
Note that all source_nodes and target_nodes were successfully mapped onto the network
Network features:
Number of nodes:59
Number of edges:100
Network features:
Number of nodes:59
Number of edges:100
RUNIT TEST PROTOCOL -- Thu May 06 04:34:48 2021
***********************************************
Number of test functions: 9
Number of errors: 0
Number of failures: 0
1 Test Suite :
MetaboSignal RUnit Tests - 9 test functions, 0 errors, 0 failures
Number of test functions: 9
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
17.29 0.81 20.18
|
|
MetaboSignal.Rcheck/examples_i386/MetaboSignal-Ex.timings
|
MetaboSignal.Rcheck/examples_x64/MetaboSignal-Ex.timings
|