Package: ropls

Version: 1.18.8

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.18.8.tar.gz

StartedAt: 2020-04-15 05:17:49 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 05:19:20 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 91.7 seconds

RetCode: 0

Status:  OK

CheckDir: ropls.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ropls.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ropls_1.18.8.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.10-bioc/meat/ropls.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ropls/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ropls’ version ‘1.18.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ropls’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘MultiDataSet’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
         user system elapsed
getMset 7.311  0.298   7.657
opls    5.327  0.408   5.784
plot    4.627  0.390   5.053
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.10-bioc/meat/ropls.Rcheck/00check.log’
for details.

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ropls
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library’
* installing *source* package ‘ropls’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘opls’ with signature ‘x="MultiDataSet"’: no definition for class “MultiDataSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ropls)

name	user	system	elapsed
checkW4M	0.229	0.024	0.255
coef	0.834	0.166	1.000
fitted	1.657	0.161	1.827
fromW4M	0.211	0.004	0.217
getEset	0.881	0.145	1.031
getLoadingMN	0.827	0.135	0.966
getMset	7.311	0.298	7.657
getPcaVarVn	0.143	0.015	0.160
getScoreMN	1.213	0.156	1.378
getSubsetVi	0.083	0.006	0.091
getSummaryDF	0.800	0.138	0.944
getVipVn	0.746	0.134	0.886
getWeightMN	0.838	0.138	0.984
opls-class	2.498	0.269	2.793
opls	5.327	0.408	5.784
oplsMultiDataSet-class	0	0	0
plot	4.627	0.390	5.053
predict	0.079	0.004	0.084
print	1.108	0.127	1.249
residuals	0.469	0.060	0.532
ropls-package	3.301	0.382	3.711
show	0.772	0.127	0.907
tested	0.071	0.007	0.078
toW4M	0.186	0.004	0.192
view	0.611	0.043	0.664