pcaMethods 1.15.2
Wolfram Stacklies
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pcaMethods | | Last Changed Rev: 27836 / Revision: 29143 | | Last Changed Date: 2007-10-08 03:33:45 -0700 (Mon, 08 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | [ ERROR ] | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* preparing 'pcaMethods':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
/tmp/Rinst2357572921
* Installing *source* package 'pcaMethods' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: MASS
Loading required package: pls
Attaching package: 'pls'
The following object(s) are masked from package:stats :
loadings
Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
Note: unmatched right brace in 'nlpca' on or after line 60
>>> Building/Updating help pages for package 'pcaMethods'
Formats: text html latex example
Q2 text html latex example
asExprSet text html latex
bpca text html latex example
checkData text html latex
class.nlpcaNet text html latex
class.nniRes text html latex
class.pcaRes text html latex
fitted.pcaRes text html latex
helix text html latex
kEstimate text html latex example
kEstimateFast text html latex example
llsImpute text html latex example
metaboliteData text html latex
metaboliteDataComplete text html latex
nipalsPca text html latex example
nlpca text html latex example
nni text html latex example
pca text html latex example
plotPcs text html latex example
plotR2 text html latex
ppca text html latex example
prep text html latex example
robustPca text html latex example
robustSvd text html latex example
slplot text html latex example
svdImpute text html latex example
svdPca text html latex example
** building package indices ...
* DONE (pcaMethods)
* creating vignettes ... ERROR
Loading required package: MASS
Loading required package: pls
Attaching package: 'pls'
The following object(s) are masked from package:stats :
loadings
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './missingValues.tex' ...
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './missingValues.tex' ...
Error: processing vignette 'outliers.Rnw' failed with diagnostics:
chunk 3
Error in robustSvd(mat) :
The aroma.light package is required in order to use this function.
The package is available at www.bioconductor.org
In addition: Warning messages:
1: The exprSet class is deprecated, use ExpressionSet instead
2: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called 'aroma.light'
Execution halted