Package: RLMM

Version: 1.0.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check RLMM_1.0.0.tar.gz

RetCode: 0

Time: 22.8 seconds

Status: OK

CheckDir: RLMM.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/Users/biocbuild/bbs-2.1-bioc/meat/RLMM.Rcheck'
* using R version 2.6.0 (2007-10-03)
* checking for file 'RLMM/DESCRIPTION' ... OK
* this is package 'RLMM' version '1.0.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RLMM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Classify : calc.meancov: no visible binding for global variable 'dflag'
Found possibly global 'T' or 'F' in the following functions:
  Classify create_Thetafile normalize_Rawfiles plot_theta
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating RLMM-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating RLMM-manual.tex ... OK
* checking RLMM-manual.tex ... OK

* Installing *source* package 'RLMM' ...
** R
** inst
** help
 >>> Building/Updating help pages for package 'RLMM'
     Formats: text html latex example 
  Classify                          text    html    latex
  create_Thetafile                  text    html    latex
  normalize_Rawfiles                text    html    latex
  plot_theta                        text    html    latex
** building package indices ...
* DONE (RLMM)