Package: gcrma

Version: 2.4.1

Command: D:\biocbld\1.8d\R\bin\R.exe CMD check gcrma_2.4.1.tar.gz

RetCode: 0

Time: 217.1 seconds

Status: OK

CheckDir: gcrma.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/1.8d/Rpacks/gcrma.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'gcrma/DESCRIPTION' ... OK
* this is package 'gcrma' version '2.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gcrma' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* creating gcrma-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating gcrma-manual.tex ... OK
* checking gcrma-manual.tex ... OK

installing R.css in D:/biocbld/1.8d/Rpacks/gcrma.Rcheck


---------- Making package gcrma ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making baseProfile.d from baseProfile.c
making computeAffinities.d from computeAffinities.c
making postmean.d from postmean.c
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c baseProfile.c -o baseProfile.o
baseProfile.c: In function `gcrma_getSeq2':
baseProfile.c:14: warning: unused variable `nx'
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c computeAffinities.c -o computeAffinities.o
gcc   -Id:/biocbld/1.8d/R/include -Wall -O2   -c postmean.c -o postmean.o
windres --include-dir d:/biocbld/1.8d/R/include  -i gcrma_res.rc -o gcrma_res.o
gcc  -shared -s  -o gcrma.dll gcrma.def baseProfile.o computeAffinities.o postmean.o gcrma_res.o  -Ld:/biocbld/1.8d/R/bin   -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'gcrma'
     Formats: text html latex example chm 
  affinity.spline.coefs             text    html    latex           chm
  bg.adjust.affinities              text    html    latex           chm
  bg.adjust.gcrma                   text    html    latex   example chm
  bg.parameters.ns                  text    html    latex           chm
  compute.affinities                text    html    latex           chm
  fast.bkg                          text    html    latex           chm
  gcrma                             text    html    latex   example chm
  gcrma.engine                      text    html    latex   example chm
  gcrma.engine2                     text    html    latex   example chm
  getCDF                            text    html    latex           chm
  justGCRMA                         text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\1.8d\Rpacks\gcrma.Rcheck\00_pkg_src\gcrma\chm\gcrma.chm


Compile time: 0 minutes, 0 seconds
12	Topics
44	Local links
0	Internet links
1	Graphic


Created d:\biocbld\1.8d\Rpacks\gcrma.Rcheck\00_pkg_src\gcrma\chm\gcrma.chm, 32,079 bytes
Compression decreased file by 22,674 bytes.
  preparing package gcrma for lazy loading

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

  adding MD5 sums

* DONE (gcrma)