Package: metaArray

Version: 1.4.4

Command: /loc/biocbuild/1.8d/R/bin/R CMD check metaArray_1.4.4.tar.gz

RetCode: 0

Time: 93.5 seconds

Status: WARNINGS

CheckDir: metaArray.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/Rpacks/metaArray.Rcheck'
* using Version 2.3.1 (2006-06-01)
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.4.4'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'fit.em':
fit.em
  Code: function(x, cl = NULL, threshold = 1e-10)
  Docs: function(x, cl = NULL, threshold = 1e-04)

* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* creating metaArray-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating metaArray-manual.tex ... OK
* checking metaArray-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/1.8d/Rpacks/metaArray.Rcheck/00check.log
for details

* Installing *source* package 'metaArray' ...
** libs
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c contr.c -o contr.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c dproc.c -o dproc.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c dproc2.c -o dproc2.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c intcor.c -o intcor.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c lowess.c -o lowess.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c mmath.c -o mmath.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c perm.c -o perm.o
gcc -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include  -I/usr/local/include  -DUSEDOUBLE -fPIC  -g -O2 -std=gnu99 -c poe.c -o poe.o
gcc -G -L/usr/local/lib -o metaArray.so contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm  
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'metaArray'
     Formats: text html latex example 
  Zscore                            text    html    latex   example
  em.draw                           text    html    latex   example
  find.init                         text    html    latex   example
  fit.em                            text    html    latex   example
  intcor                            text    html    latex   example
  logit                             text    html    latex
  mdata                             text    html    latex
  poe.em                            text    html    latex   example
  poe.mcmc                          text    html    latex   example
** building package indices ...
* DONE (metaArray)