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BioC experimental data: CHECK report for geneLenDataBase on linux2.bioconductor.org

This page was generated on 2015-10-24 19:25:28 -0400 (Sat, 24 Oct 2015).

Package 98/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.7.0
Nadia Davidson
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  WARNINGS  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  WARNINGS  OK 

Summary

Package: geneLenDataBase
Version: 1.7.0
Command: /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.7.0.tar.gz
StartedAt: 2015-10-24 12:13:49 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 12:19:13 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 323.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.3-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.7.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.3-data-experiment/meat/geneLenDataBase.Rcheck’
* using R Under development (unstable) (2015-09-09 r69333)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [18s/18s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [74s/75s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.3-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0970.0040.106
anoCar1.genscan.LENGTH0.0970.0120.109
anoCar1.xenoRefGene.LENGTH1.4930.0041.513
anoGam1.ensGene.LENGTH0.0870.0240.111
anoGam1.geneid.LENGTH0.0710.0240.094
anoGam1.genscan.LENGTH0.0650.0200.084
apiMel1.genscan.LENGTH0.0910.0080.100
apiMel2.ensGene.LENGTH0.1260.0080.135
apiMel2.geneid.LENGTH0.0950.0040.099
apiMel2.genscan.LENGTH0.0580.0080.067
aplCal1.xenoRefGene.LENGTH0.6310.0000.630
bosTau2.geneSymbol.LENGTH0.0760.0040.079
bosTau2.geneid.LENGTH0.6080.0000.608
bosTau2.genscan.LENGTH0.1180.0200.139
bosTau2.refGene.LENGTH0.0590.0200.080
bosTau2.sgpGene.LENGTH0.1480.0000.149
bosTau3.ensGene.LENGTH0.1660.0200.198
bosTau3.geneSymbol.LENGTH0.0550.0200.077
bosTau3.geneid.LENGTH0.2260.0240.255
bosTau3.genscan.LENGTH0.1030.0120.121
bosTau3.refGene.LENGTH0.0530.0160.070
bosTau3.sgpGene.LENGTH0.1400.0200.166
bosTau4.ensGene.LENGTH0.1990.0240.224
bosTau4.geneSymbol.LENGTH0.0420.0240.067
bosTau4.genscan.LENGTH0.1250.0120.137
bosTau4.nscanGene.LENGTH0.0330.0280.060
bosTau4.refGene.LENGTH0.0560.0080.064
braFlo1.xenoRefGene.LENGTH0.5220.0080.532
caeJap1.xenoRefGene.LENGTH0.6290.0000.630
caePb1.xenoRefGene.LENGTH0.4110.0000.417
caePb2.xenoRefGene.LENGTH0.4100.0000.409
caeRem2.xenoRefGene.LENGTH0.4160.0000.416
caeRem3.xenoRefGene.LENGTH0.4930.0000.493
calJac1.genscan.LENGTH0.1310.0160.147
calJac1.nscanGene.LENGTH0.1410.0000.142
calJac1.xenoRefGene.LENGTH1.2930.0001.293
canFam1.ensGene.LENGTH0.1340.0040.138
canFam1.geneSymbol.LENGTH0.010.000.01
canFam1.genscan.LENGTH0.0830.0080.091
canFam1.nscanGene.LENGTH0.0820.0040.086
canFam1.refGene.LENGTH0.0060.0040.010
canFam1.xenoRefGene.LENGTH0.7380.0000.741
canFam2.ensGene.LENGTH0.1260.0160.141
canFam2.geneSymbol.LENGTH0.010.000.01
canFam2.genscan.LENGTH0.0850.0000.086
canFam2.nscanGene.LENGTH0.1610.0000.162
canFam2.refGene.LENGTH0.0060.0040.010
canFam2.xenoRefGene.LENGTH0.7050.0040.709
cavPor3.ensGene.LENGTH0.5170.0160.534
cavPor3.genscan.LENGTH0.1280.0040.132
cavPor3.nscanGene.LENGTH0.0900.0080.098
cavPor3.xenoRefGene.LENGTH0.7400.0000.741
cb1.xenoRefGene.LENGTH0.5060.0040.511
cb3.xenoRefGene.LENGTH0.4950.0000.495
ce2.geneSymbol.LENGTH0.1090.0320.141
ce2.geneid.LENGTH0.0890.0000.089
ce2.refGene.LENGTH0.1010.0360.137
ce4.geneSymbol.LENGTH0.1190.0200.138
ce4.refGene.LENGTH0.1050.0280.133
ce4.xenoRefGene.LENGTH0.1020.0000.102
ce6.ensGene.LENGTH0.1270.0120.139
ce6.geneSymbol.LENGTH0.1020.0360.137
ce6.refGene.LENGTH0.1150.0200.134
ce6.xenoRefGene.LENGTH0.1000.0000.099
ci1.geneSymbol.LENGTH0.010.000.01
ci1.refGene.LENGTH0.0090.0000.009
ci1.xenoRefGene.LENGTH0.2460.0000.246
ci2.ensGene.LENGTH0.0870.0000.087
ci2.geneSymbol.LENGTH0.0090.0000.010
ci2.refGene.LENGTH0.0040.0080.009
ci2.xenoRefGene.LENGTH0.3450.0000.346
danRer3.ensGene.LENGTH0.2730.0080.281
danRer3.geneSymbol.LENGTH0.0700.0320.102
danRer3.refGene.LENGTH0.0810.0160.097
danRer4.ensGene.LENGTH0.1460.0000.146
danRer4.geneSymbol.LENGTH0.0710.0280.100
danRer4.genscan.LENGTH0.0900.0040.094
danRer4.nscanGene.LENGTH0.1390.0160.155
danRer4.refGene.LENGTH0.0750.0240.098
danRer5.ensGene.LENGTH0.1550.0000.155
danRer5.geneSymbol.LENGTH0.0850.0120.095
danRer5.refGene.LENGTH0.0680.0200.090
danRer5.vegaGene.LENGTH0.1420.0160.159
danRer5.vegaPseudoGene.LENGTH0.0010.0040.005
danRer6.ensGene.LENGTH0.1570.0120.168
danRer6.geneSymbol.LENGTH0.0760.0160.094
danRer6.refGene.LENGTH0.0670.0240.091
danRer6.xenoRefGene.LENGTH0.5980.0040.602
dm1.geneSymbol.LENGTH0.0860.0400.125
dm1.genscan.LENGTH0.0430.0080.051
dm1.refGene.LENGTH0.0770.0440.121
dm2.geneSymbol.LENGTH0.0880.0320.120
dm2.geneid.LENGTH0.0560.0080.064
dm2.genscan.LENGTH0.4280.0080.435
dm2.nscanGene.LENGTH0.0660.0000.065
dm2.refGene.LENGTH0.0720.0360.108
dm3.geneSymbol.LENGTH0.0770.0000.077
dm3.nscanPasaGene.LENGTH0.0960.0080.103
dm3.refGene.LENGTH0.0850.0000.084
dp2.genscan.LENGTH0.0320.0240.057
dp2.xenoRefGene.LENGTH0.2260.0040.232
dp3.geneid.LENGTH0.0620.0200.082
dp3.genscan.LENGTH0.0370.0160.052
dp3.xenoRefGene.LENGTH0.1130.0350.150
droAna1.geneid.LENGTH0.0840.0070.092
droAna1.genscan.LENGTH0.0280.0000.030
droAna1.xenoRefGene.LENGTH0.1940.0030.199
droAna2.genscan.LENGTH0.050.000.05
droAna2.xenoRefGene.LENGTH0.3070.0040.311
droEre1.genscan.LENGTH0.0340.0160.049
droEre1.xenoRefGene.LENGTH0.2680.0050.274
droGri1.genscan.LENGTH0.0620.0120.074
droGri1.xenoRefGene.LENGTH0.2670.0040.279
droMoj1.geneid.LENGTH0.1440.0160.159
droMoj1.genscan.LENGTH0.0700.0000.074
droMoj1.xenoRefGene.LENGTH0.2290.0150.246
droMoj2.genscan.LENGTH0.0500.0190.069
droMoj2.xenoRefGene.LENGTH0.2930.0040.298
droPer1.genscan.LENGTH0.0690.0080.078
droPer1.xenoRefGene.LENGTH0.4440.0040.449
droSec1.genscan.LENGTH0.0510.0040.055
droSec1.xenoRefGene.LENGTH0.2810.0040.284
droSim1.geneid.LENGTH0.0410.0160.059
droSim1.genscan.LENGTH0.0260.0080.033
droSim1.xenoRefGene.LENGTH0.2660.0000.266
droVir1.geneid.LENGTH0.1040.0000.103
droVir1.genscan.LENGTH0.0560.0160.072
droVir1.xenoRefGene.LENGTH0.2620.0000.262
droVir2.genscan.LENGTH0.1030.0160.120
droVir2.xenoRefGene.LENGTH0.3130.0040.317
droYak1.geneid.LENGTH0.0770.0160.093
droYak1.genscan.LENGTH0.0430.0200.062
droYak1.xenoRefGene.LENGTH0.5930.0000.593
droYak2.genscan.LENGTH0.0350.0240.059
droYak2.xenoRefGene.LENGTH0.2840.0000.286
equCab1.geneSymbol.LENGTH0.0090.0000.010
equCab1.geneid.LENGTH0.1140.0200.136
equCab1.nscanGene.LENGTH0.0570.0320.089
equCab1.refGene.LENGTH0.010.000.01
equCab1.sgpGene.LENGTH0.0970.0120.108
equCab2.ensGene.LENGTH0.1310.0120.146
equCab2.geneSymbol.LENGTH0.0050.0080.013
equCab2.nscanGene.LENGTH0.1000.0080.108
equCab2.refGene.LENGTH0.0140.0000.014
equCab2.xenoRefGene.LENGTH0.7420.0000.743
felCat3.ensGene.LENGTH0.1200.0040.127
felCat3.geneSymbol.LENGTH0.0080.0000.007
felCat3.geneid.LENGTH1.5210.0081.537
felCat3.genscan.LENGTH0.1580.0080.166
felCat3.nscanGene.LENGTH0.1150.0240.139
felCat3.refGene.LENGTH0.0000.0080.007
felCat3.sgpGene.LENGTH0.1810.0000.185
felCat3.xenoRefGene.LENGTH1.9690.0001.977
fr1.ensGene.LENGTH0.1050.0120.118
fr1.genscan.LENGTH0.0750.0040.080
fr2.ensGene.LENGTH0.1760.0280.204
galGal2.ensGene.LENGTH0.0760.0000.076
galGal2.geneSymbol.LENGTH0.0240.0080.032
galGal2.geneid.LENGTH0.0580.0200.079
galGal2.genscan.LENGTH0.0860.0160.103
galGal2.refGene.LENGTH0.0230.0080.032
galGal2.sgpGene.LENGTH0.0690.0280.097
galGal3.ensGene.LENGTH0.0930.0160.108
galGal3.geneSymbol.LENGTH0.0190.0120.031
galGal3.genscan.LENGTH0.1530.0120.166
galGal3.nscanGene.LENGTH0.0950.0000.095
galGal3.refGene.LENGTH0.0180.0120.030
galGal3.xenoRefGene.LENGTH0.6040.0000.604
gasAcu1.ensGene.LENGTH0.1310.0160.164
gasAcu1.nscanGene.LENGTH0.1570.0280.192
hg16.acembly.LENGTH0.6510.0000.652
hg16.ensGene.LENGTH0.1020.0080.110
hg16.exoniphy.LENGTH0.6640.0000.684
hg16.geneSymbol.LENGTH0.0910.0000.090
hg16.geneid.LENGTH0.0450.0200.065
hg16.genscan.LENGTH0.0610.0000.061
hg16.knownGene.LENGTH0.1030.0080.111
hg16.refGene.LENGTH0.0830.0000.083
hg16.sgpGene.LENGTH0.0530.0000.053
hg17.acembly.LENGTH0.3640.0000.364
hg17.acescan.LENGTH0.0090.0040.013
hg17.ccdsGene.LENGTH0.0320.0000.031
hg17.ensGene.LENGTH0.0940.0240.118
hg17.exoniphy.LENGTH0.4760.0000.477
hg17.geneSymbol.LENGTH0.1260.0040.131
hg17.geneid.LENGTH0.0850.0080.093
hg17.genscan.LENGTH0.0800.0040.085
hg17.knownGene.LENGTH0.1010.0040.106
hg17.refGene.LENGTH0.0850.0000.084
hg17.sgpGene.LENGTH0.0700.0040.074
hg17.vegaGene.LENGTH0.0330.0200.053
hg17.vegaPseudoGene.LENGTH0.0210.0040.024
hg17.xenoRefGene.LENGTH0.2780.0000.277
hg18.acembly.LENGTH0.6650.0000.666
hg18.acescan.LENGTH0.0130.0000.012
hg18.ccdsGene.LENGTH0.0340.0080.042
hg18.ensGene.LENGTH0.6500.0040.655
hg18.exoniphy.LENGTH0.5590.0000.560
hg18.geneSymbol.LENGTH0.1320.0040.137
hg18.geneid.LENGTH0.1090.0120.120
hg18.genscan.LENGTH0.0740.0160.090
hg18.knownGene.LENGTH0.1800.0040.183
hg18.knownGeneOld3.LENGTH0.1030.0080.113
hg18.refGene.LENGTH0.1130.0080.120
hg18.sgpGene.LENGTH0.1610.0080.174
hg18.sibGene.LENGTH0.2850.0040.289
hg18.xenoRefGene.LENGTH0.3370.0040.341
hg19.ccdsGene.LENGTH0.0440.0080.052
hg19.ensGene.LENGTH0.5080.0000.509
hg19.exoniphy.LENGTH0.5360.0000.536
hg19.geneSymbol.LENGTH0.1280.0080.135
hg19.knownGene.LENGTH0.2070.0360.243
hg19.nscanGene.LENGTH0.170.000.17
hg19.refGene.LENGTH0.1200.0000.121
hg19.xenoRefGene.LENGTH0.4140.0000.414
loxAfr3.xenoRefGene.LENGTH0.6240.0000.625
mm7.ensGene.LENGTH0.1680.0000.169
mm7.geneSymbol.LENGTH0.0740.0000.075
mm7.geneid.LENGTH0.0710.0120.084
mm7.genscan.LENGTH0.0590.0040.062
mm7.knownGene.LENGTH0.0800.0000.079
mm7.refGene.LENGTH0.6340.0000.634
mm7.sgpGene.LENGTH0.1160.0160.132
mm7.xenoRefGene.LENGTH0.3910.0000.390
mm8.ccdsGene.LENGTH0.0310.0120.043
mm8.ensGene.LENGTH0.0960.0160.113
mm8.geneSymbol.LENGTH0.1060.0000.106
mm8.geneid.LENGTH0.1090.0160.126
mm8.genscan.LENGTH0.090.000.09
mm8.knownGene.LENGTH0.120.000.12
mm8.nscanGene.LENGTH0.0880.0000.088
mm8.refGene.LENGTH0.1020.0040.105
mm8.sgpGene.LENGTH0.1080.0160.124
mm8.sibGene.LENGTH0.4160.0000.416
mm8.xenoRefGene.LENGTH0.4520.0160.467
mm9.acembly.LENGTH0.4930.0040.497
mm9.ccdsGene.LENGTH0.0450.0120.058
mm9.ensGene.LENGTH0.3900.0120.403
mm9.exoniphy.LENGTH0.6660.0040.671
mm9.geneSymbol.LENGTH0.2150.0000.214
mm9.geneid.LENGTH0.0810.0120.093
mm9.genscan.LENGTH0.0720.0040.077
mm9.knownGene.LENGTH0.1530.0280.182
mm9.nscanGene.LENGTH0.5730.0000.574
mm9.refGene.LENGTH0.1070.0000.107
mm9.sgpGene.LENGTH0.1230.0080.135
mm9.xenoRefGene.LENGTH0.4300.0200.451
monDom1.genscan.LENGTH0.0880.0040.092
monDom4.ensGene.LENGTH0.1020.0040.105
monDom4.geneSymbol.LENGTH0.0060.0000.006
monDom4.genscan.LENGTH0.0790.0240.103
monDom4.nscanGene.LENGTH0.0860.0240.110
monDom4.refGene.LENGTH0.0020.0040.007
monDom4.xenoRefGene.LENGTH0.3890.0000.390
monDom5.ensGene.LENGTH0.1330.0000.134
monDom5.geneSymbol.LENGTH0.0060.0000.006
monDom5.genscan.LENGTH0.1660.0000.166
monDom5.nscanGene.LENGTH0.1450.0000.145
monDom5.refGene.LENGTH0.0030.0040.006
monDom5.xenoRefGene.LENGTH0.7220.0000.732
ornAna1.ensGene.LENGTH0.1050.0120.117
ornAna1.geneSymbol.LENGTH0.0030.0000.003
ornAna1.refGene.LENGTH0.0020.0000.003
ornAna1.xenoRefGene.LENGTH0.7470.0000.747
oryLat2.ensGene.LENGTH0.0810.0040.086
oryLat2.geneSymbol.LENGTH0.0040.0000.004
oryLat2.refGene.LENGTH0.0010.0040.005
oryLat2.xenoRefGene.LENGTH0.6530.0000.653
panTro1.ensGene.LENGTH0.1440.0000.145
panTro1.geneid.LENGTH0.0900.0080.098
panTro1.genscan.LENGTH0.0830.0000.086
panTro1.xenoRefGene.LENGTH0.1500.0120.162
panTro2.ensGene.LENGTH0.6090.0000.609
panTro2.geneSymbol.LENGTH0.0840.0040.088
panTro2.genscan.LENGTH0.0520.0000.052
panTro2.nscanGene.LENGTH0.050.000.05
panTro2.refGene.LENGTH0.0760.0120.088
panTro2.xenoRefGene.LENGTH0.3900.0040.395
petMar1.xenoRefGene.LENGTH0.3300.0160.347
ponAbe2.ensGene.LENGTH0.1310.0080.139
ponAbe2.geneSymbol.LENGTH0.0110.0120.023
ponAbe2.genscan.LENGTH0.0830.0000.083
ponAbe2.nscanGene.LENGTH0.0810.0000.082
ponAbe2.refGene.LENGTH0.0110.0120.023
ponAbe2.xenoRefGene.LENGTH0.8000.0040.805
priPac1.xenoRefGene.LENGTH0.4110.0000.411
rheMac2.ensGene.LENGTH0.1470.0160.163
rheMac2.geneSymbol.LENGTH0.0060.0040.010
rheMac2.geneid.LENGTH0.1090.0000.109
rheMac2.nscanGene.LENGTH0.1640.0000.164
rheMac2.refGene.LENGTH0.0010.0080.009
rheMac2.sgpGene.LENGTH0.1030.0040.107
rheMac2.xenoRefGene.LENGTH0.6830.0000.683
rn3.ensGene.LENGTH0.1370.0040.141
rn3.geneSymbol.LENGTH0.0970.0000.097
rn3.geneid.LENGTH0.070.000.07
rn3.genscan.LENGTH0.0900.0040.094
rn3.knownGene.LENGTH0.0360.0120.048
rn3.nscanGene.LENGTH0.0790.0000.079
rn3.refGene.LENGTH0.0690.0280.095
rn3.sgpGene.LENGTH0.5230.0040.528
rn3.xenoRefGene.LENGTH0.5520.0000.552
rn4.ensGene.LENGTH0.1610.0080.169
rn4.geneSymbol.LENGTH0.0940.0040.098
rn4.geneid.LENGTH0.1190.0200.139
rn4.genscan.LENGTH0.0890.0040.093
rn4.knownGene.LENGTH0.0370.0080.047
rn4.nscanGene.LENGTH0.0880.0280.116
rn4.refGene.LENGTH0.0780.0200.098
rn4.sgpGene.LENGTH0.1170.0120.129
rn4.xenoRefGene.LENGTH0.3020.0000.302
sacCer1.ensGene.LENGTH0.0160.0080.024
sacCer2.ensGene.LENGTH0.0150.0080.022
strPur1.geneSymbol.LENGTH0.0060.0000.006
strPur1.genscan.LENGTH0.1340.0000.134
strPur1.refGene.LENGTH0.0010.0040.005
strPur1.xenoRefGene.LENGTH0.4410.0040.445
strPur2.geneSymbol.LENGTH0.0070.0000.008
strPur2.genscan.LENGTH0.1380.0000.138
strPur2.refGene.LENGTH0.0070.0000.007
strPur2.xenoRefGene.LENGTH0.7580.0000.758
supportedGeneIDs0.0750.0000.075
supportedGenomes0.0680.0040.646
taeGut1.ensGene.LENGTH0.0580.0040.061
taeGut1.geneSymbol.LENGTH0.0030.0000.003
taeGut1.genscan.LENGTH0.0380.0080.046
taeGut1.nscanGene.LENGTH0.0410.0160.056
taeGut1.refGene.LENGTH0.0050.0000.004
taeGut1.xenoRefGene.LENGTH0.5650.0000.570
tetNig1.ensGene.LENGTH0.1320.0080.141
tetNig1.geneid.LENGTH0.0960.0080.105
tetNig1.genscan.LENGTH0.1740.0150.191
tetNig1.nscanGene.LENGTH0.1010.0130.113
tetNig2.ensGene.LENGTH0.1060.0070.112
unfactor0.0070.0010.007
xenTro1.genscan.LENGTH0.1190.0000.120
xenTro2.ensGene.LENGTH0.1380.0080.146
xenTro2.geneSymbol.LENGTH0.0460.0110.062
xenTro2.genscan.LENGTH0.1030.0200.122
xenTro2.refGene.LENGTH0.0380.0200.058